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Install Appion Packages » History » Revision 34

Revision 33 (Amber Herold, 11/20/2013 03:31 PM) → Revision 34/41 (Amber Herold, 11/20/2013 03:32 PM)

h1. Install Appion Packages 

 h2. Install the appion python package 

 Since the appion package includes many executable scripts, it is important that you know where they are being installed.    To prevent cluttering up the /usr/bin directory, you can specify an alternative path, typically /usr/local/bin, or a directory of your choice that you will later add to your PATH environment variable.    Install appion like this: 
 <pre> 
 cd /path/to/myami-VERSION/appion 
 sudo python setup.py install --install-scripts=/usr/local/bin/appion 
 </pre> 

 h2. Install all the myami python packages _except appion_ using the following script: 

 {{include(appion:Install Appion Packages Shared)}} 

 h2. Set additional appion environment variables 

 Finally, you will need to set the the MATLABPATH environment variable in order to get the Appion utilities that use Matlab to work. 
 For bash: 
 <pre> 
 export MATLABPATH=$MATLABPATH:<your_appion_directory>/ace 
 </pre> 
 or C shell 
 <pre> 
 setenv MATLABPATH $MATLABPATH:<your_appion_directory>/ace 
 </pre> 

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 [[Download Appion Files|< Download Appion/Leginon Files]] [[Perform system check|< Perform system check]] | [[Perform system check|Perform system check >]] 
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