Project

General

Profile

Install Appion Packages » History » Version 41

Anchi Cheng, 01/30/2018 11:04 PM

1 28 Anchi Cheng
h1. Install Appion Packages
2
3 32 Anchi Cheng
h2. Install the appion python package
4 28 Anchi Cheng
5 35 Anchi Cheng
{{include(Install_Appion_bin_shared)}}
6 28 Anchi Cheng
7 32 Anchi Cheng
h2. Install all the myami python packages _except appion_ using the following script:
8 1 Amber Herold
9
{{include(appion:Install Appion Packages Shared)}}
10 32 Anchi Cheng
11 37 Carl Negro
12 39 Carl Negro
h3. Check permissions
13 37 Carl Negro
14 39 Carl Negro
Verify that all users have executable permission for rctacquisition.py. It may be necessary to run:
15 37 Carl Negro
16
<pre>
17
chmod 755 ./leginon/rctacquisition.py
18
</pre>
19
20 32 Anchi Cheng
h2. Set additional appion environment variables
21 28 Anchi Cheng
22
Finally, you will need to set the the MATLABPATH environment variable in order to get the Appion utilities that use Matlab to work.
23
For bash:
24
<pre>
25
export MATLABPATH=$MATLABPATH:<your_appion_directory>/ace
26
</pre>
27
or C shell
28
<pre>
29
setenv MATLABPATH $MATLABPATH:<your_appion_directory>/ace
30
</pre>
31 2 Amber Herold
32
______
33
34 36 Amber Herold
35 34 Amber Herold
[[Download Appion Files|< Download Appion/Leginon Files]] | [[Perform system check|Perform system check >]]
36 36 Amber Herold
37 1 Amber Herold
______