Install Appion Packages » History » Version 41
  Anchi Cheng, 01/30/2018 11:04 PM 
  
| 1 | 28 | Anchi Cheng | h1. Install Appion Packages  | 
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| 3 | 32 | Anchi Cheng | h2. Install the appion python package  | 
| 4 | 28 | Anchi Cheng | |
| 5 | 35 | Anchi Cheng | {{include(Install_Appion_bin_shared)}} | 
| 6 | 28 | Anchi Cheng | |
| 7 | 32 | Anchi Cheng | h2. Install all the myami python packages _except appion_ using the following script:  | 
| 8 | 1 | Amber Herold | |
| 9 | {{include(appion:Install Appion Packages Shared)}} | 
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| 10 | 32 | Anchi Cheng | |
| 11 | 37 | Carl Negro | |
| 12 | 39 | Carl Negro | h3. Check permissions  | 
| 13 | 37 | Carl Negro | |
| 14 | 39 | Carl Negro | Verify that all users have executable permission for rctacquisition.py. It may be necessary to run:  | 
| 15 | 37 | Carl Negro | |
| 16 | <pre>  | 
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| 17 | chmod 755 ./leginon/rctacquisition.py  | 
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| 18 | </pre>  | 
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| 20 | 32 | Anchi Cheng | h2. Set additional appion environment variables  | 
| 21 | 28 | Anchi Cheng | |
| 22 | Finally, you will need to set the the MATLABPATH environment variable in order to get the Appion utilities that use Matlab to work.  | 
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| 23 | For bash:  | 
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| 24 | <pre>  | 
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| 25 | export MATLABPATH=$MATLABPATH:<your_appion_directory>/ace  | 
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| 26 | </pre>  | 
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| 27 | or C shell  | 
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| 28 | <pre>  | 
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| 29 | setenv MATLABPATH $MATLABPATH:<your_appion_directory>/ace  | 
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| 30 | </pre>  | 
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| 31 | 2 | Amber Herold | |
| 32 | ______  | 
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| 33 | |||
| 34 | 36 | Amber Herold | |
| 35 | 34 | Amber Herold | [[Download Appion Files|< Download Appion/Leginon Files]] | [[Perform system check|Perform system check >]]  | 
| 36 | 36 | Amber Herold | |
| 37 | 1 | Amber Herold | ______  |