Install EMAN2 » History » Version 20
Neil Voss, 08/13/2012 08:26 PM
1 | 1 | Neil Voss | h1. Install EMAN2/SPARX |
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3 | It is best to install EMAN2/SPARX from source, so that do not have conflicts with having two different versions of python on your system. Binaries of EMAN2/SPARX all come with their own python pre-installed. |
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4 | 2 | Neil Voss | |
5 | 6 | Neil Voss | This documentation assumes you are using CentOS 6 (written as of CentOS 6.2) |
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7 | h2. Install require pre-packages for EMAN2 compiling |
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9 | 7 | Neil Voss | * Make sure EPEL is install, if not go here: [[Download additional Software (CentOS Specific)]] |
10 | * Use yum to install devel libraries: |
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11 | <pre> |
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12 | 10 | Neil Voss | sudo yum install fftw-devel gsl-devel boost-python numpy \ |
13 | 12 | Neil Voss | PyQt4-devel cmake ipython hdf5-devel libtiff-devel libpng-devel \ |
14 | 20 | Neil Voss | PyOpenGL ftgl-devel db4-devel |
15 | 8 | Neil Voss | </pre> |
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17 | 3 | Neil Voss | h2. Download the source |
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19 | # To download the source code go to the link: |
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20 | #* http://blake.bcm.edu/emanwiki/EMAN2 |
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21 | # Click on *"Current stable version - direct link"* |
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22 | # Go under the heading "Source" at bottom of page |
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23 | 17 | Neil Voss | # Click to download the *eman-source-2.xx.tar.gz* file (as of August 2012, 2.xx is 2.06) |
24 | 3 | Neil Voss | |
25 | h2. Work with the source |
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27 | # go to the directory with the source code |
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28 | # extract the archive: |
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29 | <pre> |
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30 | tar zxvf eman-source-2.06.tar.gz |
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31 | </pre> |
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32 | 4 | Neil Voss | # go into directory |
33 | 1 | Neil Voss | <pre>cd EMAN2/src/build</pre> |
34 | 15 | Neil Voss | # start configure script: |
35 | <pre>cmake ../eman2/</pre> |
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36 | 19 | Neil Voss | #* Note: alternatively you can run @ccmake ../eman2/@ and configure all the parameters |
37 | 11 | Neil Voss | # start compiling: |
38 | 15 | Neil Voss | <pre>make</pre> |
39 | 18 | Neil Voss | # install to directory: |
40 | <pre>sudo make install</pre> |
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41 | 3 | Neil Voss | |
42 | 16 | Neil Voss | h2. Test to see if code works |
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44 | see http://blake.bcm.edu/emanwiki/EMAN2/FAQ/EMAN2_unittest |
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46 | <pre> |
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47 | cd EMAN2/test/rt |
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48 | ./rt.py |
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49 | </pre> |
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51 | 3 | Neil Voss | h2. Documentation |
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53 | * http://blake.bcm.edu/emanwiki/EMAN2/Install |
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54 | 9 | Neil Voss | * http://blake.bcm.edu/emanwiki/EMAN2/FAQ/eman2BuildFAQ |
55 | 3 | Neil Voss | |
56 | 2 | Neil Voss | ______ |
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58 | [[Install EMAN|< Install EMAN 1]] | [[Install SPIDER|Install SPIDER >]] |
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60 | ______ |