Project

General

Profile

Install EMAN2 » History » Version 20

Neil Voss, 08/13/2012 08:26 PM

1 1 Neil Voss
h1. Install EMAN2/SPARX
2
3
It is best to install EMAN2/SPARX from source, so that do not have conflicts with having two different versions of python on your system. Binaries of EMAN2/SPARX all come with their own python pre-installed.
4 2 Neil Voss
5 6 Neil Voss
This documentation assumes you are using CentOS 6 (written as of CentOS 6.2)
6
7
h2. Install require pre-packages for EMAN2 compiling
8
9 7 Neil Voss
* Make sure EPEL is install, if not go here: [[Download additional Software (CentOS Specific)]]
10
* Use yum to install devel libraries:
11
<pre>
12 10 Neil Voss
sudo yum install fftw-devel gsl-devel boost-python numpy \
13 12 Neil Voss
 PyQt4-devel cmake ipython hdf5-devel libtiff-devel libpng-devel \
14 20 Neil Voss
 PyOpenGL ftgl-devel db4-devel
15 8 Neil Voss
</pre>
16
17 3 Neil Voss
h2. Download the source
18
19
# To download the source code go to the link:
20
#* http://blake.bcm.edu/emanwiki/EMAN2
21
# Click on *"Current stable version - direct link"*
22
# Go under the heading "Source" at bottom of page
23 17 Neil Voss
# Click to download the *eman-source-2.xx.tar.gz* file (as of August 2012, 2.xx is 2.06)
24 3 Neil Voss
25
h2. Work with the source
26
27
# go to the directory with the source code
28
# extract the archive:
29
<pre>
30
tar zxvf eman-source-2.06.tar.gz
31
</pre>
32 4 Neil Voss
# go into directory
33 1 Neil Voss
<pre>cd EMAN2/src/build</pre>
34 15 Neil Voss
# start configure script:
35
<pre>cmake ../eman2/</pre>
36 19 Neil Voss
#* Note: alternatively you can run @ccmake ../eman2/@ and configure all the parameters
37 11 Neil Voss
# start compiling:
38 15 Neil Voss
<pre>make</pre>
39 18 Neil Voss
# install to directory:
40
<pre>sudo make install</pre>
41 3 Neil Voss
42 16 Neil Voss
h2. Test to see if code works
43
44
see http://blake.bcm.edu/emanwiki/EMAN2/FAQ/EMAN2_unittest
45
46
<pre>
47
cd EMAN2/test/rt
48
./rt.py
49
</pre>
50
51 3 Neil Voss
h2. Documentation
52
53
* http://blake.bcm.edu/emanwiki/EMAN2/Install
54 9 Neil Voss
* http://blake.bcm.edu/emanwiki/EMAN2/FAQ/eman2BuildFAQ
55 3 Neil Voss
56 2 Neil Voss
______
57
58
[[Install EMAN|< Install EMAN 1]] | [[Install SPIDER|Install SPIDER >]]
59
60
______