Install Grigorieff lab software » History » Version 15
Amber Herold, 03/10/2011 01:12 PM
| 1 | 1 | Neil Voss | h1. Install Grigorieff lab software |
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| 3 | 7 | Neil Voss | The Grigorieff lab at Brandies provides several individual programs that are used in Appion. See their "main software page":http://emlab.rose2.brandeis.edu/software to download their software |
| 4 | 2 | Neil Voss | |
| 5 | h2. Software used in Appion: |
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| 7 | 8 | Neil Voss | * "Frealign":http://emlab.rose2.brandeis.edu/frealign — Refinement of 3D reconstructions using single-particle images |
| 8 | 10 | Neil Voss | * "CTFfind and CTFtilt":http://emlab.rose2.brandeis.edu/ctf — CTF estimation |
| 9 | 14 | Amber Herold | ** *NOTE:* Once installed, you must rename ctffind3.exe to ctffind64.exe and ctftilt.exe to ctftilt64.exe or create symbolic links. Otherwise, you will receive an error that ctffind64.exe was not found during ctf estimation. |
| 10 | 10 | Neil Voss | * "Signature":http://emlab.rose2.brandeis.edu/signature — Particle selection from micrographs |
| 11 | 15 | Amber Herold | ** *NOTE:* Once installed, you must rename signature.exe to signature64.exe or create symbolic links. Otherwise, you will receive an error that signature64.exe was not found. |
| 12 | 10 | Neil Voss | * "Rmeasure":http://emlab.rose2.brandeis.edu/rmeasure — Resolution measurement |
| 13 | 11 | Amber Herold | |
| 14 | 1 | Neil Voss | ______ |
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| 16 | [[Install UCSF Chimera|< Install UCSF Chimera]] | [[Compile FindEM|Compile FindEM >]] |
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| 18 | ______ |