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Install Grigorieff lab software » History » Revision 15

Revision 14 (Amber Herold, 02/25/2011 01:27 PM) → Revision 15/18 (Amber Herold, 03/10/2011 01:12 PM)

h1. Install Grigorieff lab software 

 The Grigorieff lab at Brandies provides several individual programs that are used in Appion. See their "main software page":http://emlab.rose2.brandeis.edu/software to download their software 

 h2. Software used in Appion: 

 * "Frealign":http://emlab.rose2.brandeis.edu/frealign — Refinement of 3D reconstructions using single-particle images 
 * "CTFfind and CTFtilt":http://emlab.rose2.brandeis.edu/ctf — CTF estimation 
 ** *NOTE:* Once installed, you must rename ctffind3.exe to ctffind64.exe and ctftilt.exe to ctftilt64.exe or create symbolic links. Otherwise, you will receive an error that ctffind64.exe was not found during ctf estimation. 
 * "Signature":http://emlab.rose2.brandeis.edu/signature — Particle selection from micrographs 
 ** *NOTE:* Once installed, you must rename signature.exe to signature64.exe or create symbolic links. Otherwise, you will receive an error that signature64.exe was not found. 
 * "Rmeasure":http://emlab.rose2.brandeis.edu/rmeasure — Resolution measurement 

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 [[Install UCSF Chimera|< Install UCSF Chimera]] | [[Compile FindEM|Compile FindEM >]] 

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