Install SIMPLE » History » Version 2
Amber Herold, 08/24/2012 12:05 PM
| 1 | 1 | Amber Herold | h1. Install SIMPLE |
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| 3 | h1. SIMPLE |
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| 5 | h2. Installation in /ami/sw: |
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| 7 | <pre>mkdir /ami/sw/packages/SIMPLE |
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| 8 | cd /ami/sw/packages/SIMPLE |
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| 9 | mkdir downloads |
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| 10 | cd downloads |
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| 11 | wget http://simple.stanford.edu/binaries/simple_linux_120521.tar.gz |
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| 12 | cd .. |
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| 13 | tar zxf downloads/simple_linux_120521.tar.gz |
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| 14 | cd simple_linux_120521 |
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| 15 | ./simple_config.pl</pre>type "local" when prompted. |
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| 17 | This actually modifies the files in simple_linux_120521 to configure them with the correct path. This cannot later be modified by running ./simple_config.pl again on the same directory, so if you want to install somewhere other than /ami/sw/packages/SIMPLE/simple_linux_120521, then you have to unpack a new copy from the tar.gz and run simple_config.pl once it is in the new location. |
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| 19 | To set up your environment to use the executables in this new SIMPLE installation, you need both "apps" and "bin" subdirectory in your PATH. For example:<pre>export PATH=$PATH:/ami/sw/packages/SIMPLE/simple_linux_120521/apps:/ami/sw/packages/SIMPLE/simple_linux_120521/bin</pre> |
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| 21 | WARNING: I notice that some commands in the bin directory are fairly generic names, so just be aware of this when adding this to PATH. For example, there is a command "align", so hopefully there is no other "align" command which conflicts with this. |