Project

General

Profile

Install SPIDER » History » Version 11

Neil Voss, 05/13/2010 09:05 AM

1 1 Neil Voss
h1. Install SPIDER
2
3 7 Neil Voss
h2. Download SPIDER binary "from wadsworth.org":http://www.wadsworth.org/spider_doc/spider/docs/spi-register.html (250 MiB)
4 4 Neil Voss
5 7 Neil Voss
bq. Most of our SPIDER scripts were originally designed around SPIDER v14 and v15, but we are diligently working toward compatibility with SPIDER v18. That said you are probably best off using the newest version of SPIDER (v18.10 as of May 2010) and then reporting any bugs to us.
6 1 Neil Voss
7 7 Neil Voss
h2. Extract the archive
8
9
<pre>tar -zxvf spiderweb.18.10.tar.gz</pre>
10 1 Neil Voss
11 9 Neil Voss
bq. The archive will create 3 folders: spider, spire, and web. At this time only the *spider* program is used within Appion, you can safely ignore web and spire.
12 8 Neil Voss
13 10 Neil Voss
h2. Install SPIDER
14 1 Neil Voss
15 10 Neil Voss
* Copy the spider folder to global directory:
16
<pre>sudo mv -v spider /usr/local/</pre>
17 1 Neil Voss
18 10 Neil Voss
* Next, you need to determine which version of the spider binary you need to use on your system.
19 11 Neil Voss
<pre>
20
cd /usr/local/spider/bin
21
ls spider*
22
  spider_linux           spider_linux_mp_intel64  spider_linux_mp_opt64  spider_osx_64_pgi
23
  spider_linux_mp_intel  spider_linux_mpi_opt64   spider_osx_32_pgi
24
</pre>
25 10 Neil Voss
26
27
<pre>sudo ln -sv /usr/local/spider/bin/spider /usr/local/</pre>
28
29
h2. Set environmental variables
30
31
h3. For @BASH@, create an spider.sh and add the following lines:
32
33 1 Neil Voss
<pre>
34 10 Neil Voss
export SPIDER=/usr/local/spider
35
export SPMAN_DIR=${SPIDER}/man
36
export SPPROC_DIR=${SPIDER}/proc
37
export SPRGB_DIR=${SPIDER}/rgb
38 8 Neil Voss
</pre>
39 1 Neil Voss
40 10 Neil Voss
h3. For @C@ shell, create an spider.csh and add the following lines:
41 1 Neil Voss
42
<pre>
43 10 Neil Voss
setenv SPIDER /usr/local/spider
44
setenv SPMAN_DIR ${SPIDER}/man
45
setenv SPPROC_DIR ${SPIDER}/proc
46
setenv SPRGB_DIR ${SPIDER}/rgb
47 8 Neil Voss
</pre>
48
49
h3. And then add it to the global /etc/profile.d/ folder
50
51
<pre>
52 10 Neil Voss
sudo cp -v spider.sh /etc/profile.d/spider.sh
53
sudo chmod 755 /etc/profile.d/spider.sh
54 8 Neil Voss
55 10 Neil Voss
-or-
56
57
sudo cp -v spider.csh /etc/profile.d/spider.csh
58
sudo chmod 755 /etc/profile.d/spider.csh
59 1 Neil Voss
</pre>
60
61
62
[[Install EMAN|< Install EMAN]] | [[Install Xmipp|Install Xmipp >]]