Install Xmipp » History » Revision 16
Revision 15 (Neil Voss, 05/12/2010 12:09 PM) → Revision 16/61 (Neil Voss, 05/12/2010 12:10 PM)
h1. Install Xmipp
* Download the v2.4 source code from http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/InstallingTheSoftware
* Unzip the source code:
<pre>tar zxvf Xmipp-2.4-src.tar.gz</pre>
* Go into Xmipp source directory
* Find openmpi directory
<pre>
locate libmpi.so
/usr/lib64/openmpi/1.3.2-gcc/lib/libmpi.so
</pre>
* Setup Xmipp to use openmpi by changing three lines in SConstruct
<pre>
cp -v SConstruct SConstruct.orig
</pre>
<pre>
opts.Add('MPI_INCLUDE', 'MPI headers dir ', '/usr/lib/openmpi/1.2.7-gcc/include/')
opts.Add('MPI_LIBDIR', 'MPI libraries dir ', '/usr/lib/openmpi/1.2.7-gcc/lib/')
opts.Add('MPI_LIB', 'MPI library', 'mpi')
</pre>
* Compile
<pre>
sudo mpi-selector --yes --system --set `rpm --qf '%{NAME}-%{VERSION}-gcc-%{ARCH}\n' -q openmpi`
export PATH=$PATH:/usr/lib64/openmpi/1.3.2-gcc/bin
./scons.configure
</pre>
* Look for the following line in the output:
<pre>
* Checking for MPI ... yes
</pre>
* Now compile the source code
<pre>
./scons.compile
</pre>
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[[Compile Ace2|< Radermacher|< Compile Ace2]] Radermacher]] | [[Test Appion|Test Appion >]]
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