Install Xmipp » History » Revision 2
Revision 1 (Amber Herold, 03/17/2010 02:22 PM) → Revision 2/61 (Amber Herold, 03/17/2010 02:39 PM)
h1. Install Xmipp *TODO:* List the lastest version that we have tested with. * For more info, see http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/InstallingTheSoftware * Go into Xmipp source directory * Find openmpi directory <pre> $ locate libmpi.so </pre> <pre> /usr/lib/openmpi/1.2.7-gcc/lib/libmpi.so </pre> * Setup Xmipp to use openmpi by changing three lines in SConstruct <pre> $ cp SConstruct SConstruct.orig </pre> <pre> $ nano SConstruct </pre> <pre> opts.Add('MPI_INCLUDE', 'MPI headers dir ', '/usr/lib/openmpi/1.2.7-gcc/include/') opts.Add('MPI_LIBDIR', 'MPI libraries dir ', '/usr/lib/openmpi/1.2.7-gcc/lib/') opts.Add('MPI_LIB', 'MPI library', 'mpi') </pre> * Compile <pre> $ sudo mpi-selector --yes --system --set `rpm --qf '%{NAME}-%{VERSION}-gcc-%{ARCH}\n' -q openmpi` </pre> <pre> $ export PATH=$PATH:/usr/lib/openmpi/1.2.7-gcc/bin </pre> <pre> $ ./scons.configure </pre> you should see the line: <pre> * Checking for MPI ... yes </pre> <pre> $ ./scons.compile </pre>