Install Xmipp » History » Version 5
Amber Herold, 03/17/2010 03:13 PM
| 1 | 1 | Amber Herold | h1. Install Xmipp |
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| 3 | *TODO:* List the lastest version that we have tested with. |
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| 5 | 5 | Amber Herold | * Download the source code from http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/InstallingTheSoftware |
| 6 | 1 | Amber Herold | * Go into Xmipp source directory |
| 7 | * Find openmpi directory |
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| 8 | |||
| 9 | <pre> |
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| 10 | $ locate libmpi.so |
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| 11 | </pre> |
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| 12 | |||
| 13 | <pre> |
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| 14 | /usr/lib/openmpi/1.2.7-gcc/lib/libmpi.so |
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| 15 | </pre> |
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| 16 | |||
| 17 | * Setup Xmipp to use openmpi by changing three lines in SConstruct |
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| 18 | |||
| 19 | <pre> |
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| 20 | $ cp SConstruct SConstruct.orig |
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| 21 | 3 | Amber Herold | $ vi SConstruct |
| 22 | 1 | Amber Herold | </pre> |
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| 24 | <pre> |
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| 25 | opts.Add('MPI_INCLUDE', 'MPI headers dir ', '/usr/lib/openmpi/1.2.7-gcc/include/') |
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| 26 | opts.Add('MPI_LIBDIR', 'MPI libraries dir ', '/usr/lib/openmpi/1.2.7-gcc/lib/') |
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| 27 | opts.Add('MPI_LIB', 'MPI library', 'mpi') |
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| 28 | </pre> |
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| 29 | |||
| 30 | * Compile |
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| 31 | |||
| 32 | <pre> |
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| 33 | $ sudo mpi-selector --yes --system --set `rpm --qf '%{NAME}-%{VERSION}-gcc-%{ARCH}\n' -q openmpi` |
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| 34 | $ export PATH=$PATH:/usr/lib/openmpi/1.2.7-gcc/bin |
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| 35 | $ ./scons.configure |
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| 36 | </pre> |
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| 37 | |||
| 38 | 5 | Amber Herold | * Look for the following line in the output: |
| 39 | 1 | Amber Herold | |
| 40 | <pre> |
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| 41 | * Checking for MPI ... yes |
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| 42 | </pre> |
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| 43 | |||
| 44 | <pre> |
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| 45 | $ ./scons.compile |
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| 46 | </pre> |