Install Xmipp » History » Version 7
Amber Herold, 03/17/2010 03:14 PM
| 1 | 1 | Amber Herold | h1. Install Xmipp |
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| 3 | 6 | Amber Herold | * Download the v2.3 source code from http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/InstallingTheSoftware |
| 4 | 1 | Amber Herold | * Go into Xmipp source directory |
| 5 | * Find openmpi directory |
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| 6 | |||
| 7 | <pre> |
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| 8 | $ locate libmpi.so |
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| 9 | </pre> |
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| 10 | |||
| 11 | <pre> |
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| 12 | /usr/lib/openmpi/1.2.7-gcc/lib/libmpi.so |
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| 13 | </pre> |
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| 14 | |||
| 15 | * Setup Xmipp to use openmpi by changing three lines in SConstruct |
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| 16 | |||
| 17 | <pre> |
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| 18 | $ cp SConstruct SConstruct.orig |
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| 19 | 3 | Amber Herold | $ vi SConstruct |
| 20 | 1 | Amber Herold | </pre> |
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| 22 | <pre> |
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| 23 | opts.Add('MPI_INCLUDE', 'MPI headers dir ', '/usr/lib/openmpi/1.2.7-gcc/include/') |
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| 24 | opts.Add('MPI_LIBDIR', 'MPI libraries dir ', '/usr/lib/openmpi/1.2.7-gcc/lib/') |
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| 25 | opts.Add('MPI_LIB', 'MPI library', 'mpi') |
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| 26 | </pre> |
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| 27 | |||
| 28 | * Compile |
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| 29 | |||
| 30 | <pre> |
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| 31 | $ sudo mpi-selector --yes --system --set `rpm --qf '%{NAME}-%{VERSION}-gcc-%{ARCH}\n' -q openmpi` |
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| 32 | $ export PATH=$PATH:/usr/lib/openmpi/1.2.7-gcc/bin |
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| 33 | $ ./scons.configure |
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| 34 | </pre> |
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| 35 | |||
| 36 | 5 | Amber Herold | * Look for the following line in the output: |
| 37 | 1 | Amber Herold | |
| 38 | <pre> |
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| 39 | * Checking for MPI ... yes |
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| 40 | </pre> |
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| 41 | |||
| 42 | <pre> |
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| 43 | $ ./scons.compile |
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| 44 | </pre> |