Install Xmipp » History » Revision 7
Revision 6 (Amber Herold, 03/17/2010 03:14 PM) → Revision 7/61 (Amber Herold, 03/17/2010 03:14 PM)
h1. Install Xmipp
*TODO:* List the lastest version that we have tested with.
* Download the v2.3 source code from http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/InstallingTheSoftware
* Go into Xmipp source directory
* Find openmpi directory
<pre>
$ locate libmpi.so
</pre>
<pre>
/usr/lib/openmpi/1.2.7-gcc/lib/libmpi.so
</pre>
* Setup Xmipp to use openmpi by changing three lines in SConstruct
<pre>
$ cp SConstruct SConstruct.orig
$ vi SConstruct
</pre>
<pre>
opts.Add('MPI_INCLUDE', 'MPI headers dir ', '/usr/lib/openmpi/1.2.7-gcc/include/')
opts.Add('MPI_LIBDIR', 'MPI libraries dir ', '/usr/lib/openmpi/1.2.7-gcc/lib/')
opts.Add('MPI_LIB', 'MPI library', 'mpi')
</pre>
* Compile
<pre>
$ sudo mpi-selector --yes --system --set `rpm --qf '%{NAME}-%{VERSION}-gcc-%{ARCH}\n' -q openmpi`
$ export PATH=$PATH:/usr/lib/openmpi/1.2.7-gcc/bin
$ ./scons.configure
</pre>
* Look for the following line in the output:
<pre>
* Checking for MPI ... yes
</pre>
<pre>
$ ./scons.compile
</pre>