Install the Web Interface Advanced » History » Revision 4
Revision 3 (Amber Herold, 05/08/2012 11:11 AM) → Revision 4/14 (Amber Herold, 05/08/2012 11:16 AM)
h1. Install the Web Interface Advanced
h3. Manual configuration instructions (Advanced User)
*Note:* You may skip this section if you configured your installation with the setup wizard at http://localhost/myamiweb/setup.
Copy config.php.template to config.php and edit the latter by adding these parameters:
"config.php" should be located in /var/www/html/myamiweb/ on CentOS and /srv/www/htdocs/myamiweb/ on SuSE.
* define site base path
* This should be changed if the myamiweb directory is located
* in a sub-directory of the Apache web directory.
* ex. myamiweb is in /var/www/html/applications/myamiweb/ then
* change to define('BASE_PATH',"applications/myamiweb");
<pre>
define('BASE_PATH',"myamiweb");
</pre>
* myamiweb login system
<pre>
// Browse to the administration tools in myamiweb prior to
// changing this to true to populate DB tables correctly.
define('ENABLE_LOGIN', false);
</pre>
* Administrator email title and email address
<pre>
define('EMAIL_TITLE', 'The name of your institute');
define('ADMIN_EMAIL', "example@institute.edu");
</pre>
* SMTP Server setup (not required but recommended):
<pre>
define('ENABLE_SMTP', false);
define('SMTP_HOST', 'mail.institute.edu'); //your smtp host
</pre>
* When SMTP server requires authentication
<pre>
// --- Check this with your email administrator -- //
// --- Set it to true if your SMTP server requires authentication -- //
define('SMTP_AUTH', false);
// --- If SMTP_AUTH is not required(SMTP_AUTH set to false, -- //
// --- no need to fill in 'SMTP_USERNAME' & SMTP_PASSWORD -- //
define('SMTP_USERNAME', "");
define('SMTP_PASSWORD', "");
</pre>
* Setup your MySQL database server parameters:
<pre>
define('DB_HOST', ""); // DB Host name
define('DB_USER', ""); // DB User name
define('DB_PASS', ""); // DB Password
define('DB_LEGINON', ""); // Leginon database name
define('DB_PROJECT', ""); // Project database name
</pre>
* Enable Image Cache
If you want to use caching function for faster image loading time in image viewer, change 'ENABLE_CACHE' to true.
You can change the 'CACHE_PATH' to other location, but make sure the apache user has write access to this folder.
<pre>
// --- Enable Image Cache --- //
define('ENABLE_CACHE', true);
// --- caching location --- //
// --- please make sure the apache user has write access to this folder --- //
define('CACHE_PATH', '/srv/www/cache/');
define('CACHE_SCRIPT', WEB_ROOT.'/makejpg.php');
</pre>
For Appion Installation, also setup these in config.php:
* Enable the processing plug-in by uncommenting out the following line in the file`myamiweb/config.php`
<pre>
addplugin("processing");
</pre>
* IMAGIC and Other features:
<pre>
// Check if IMAGIC is installed and running, otherwise hide all functions
define('HIDE_IMAGIC', false);
// hide processing tools still under development.
define('HIDE_FEATURE', true);
</pre>
* Add processing host information
Appion version 2.2 and later:
Appion version 2.1 and prior:
<pre>
// --- Please enter your processing host information associate with -- //
// --- Maximum number of the processing nodes -- //
// --- $PROCESSING_HOSTS[] = array('host' => 'host1.school.edu', 'nproc' => 4); -- //
// --- $PROCESSING_HOSTS[] = array('host' => 'host2.school.edu', 'nproc' => 8); -- //
// $PROCESSING_HOSTS[] = array('host' => '', 'nproc' => );
</pre>
* Microscope spherical aberration constant
Not needed for Appion version 2.2 and later. Version 2.1 and earlier only:
<pre>
$DEFAULTCS = "2.0";
</pre>
* IMAGIC and Other features:
<pre>
// Check if IMAGIC is installed and running, otherwise hide all functions
define('HIDE_IMAGIC', false);
// hide processing tools still under development.
define('HIDE_FEATURE', true);
</pre>
We will not include the cluster registration now. It is covered in the last part of this document.
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