PDB to Model » History » Revision 3
Revision 2 (Anke Mulder, 07/08/2010 05:39 PM) → Revision 3/7 (Anke Mulder, 07/08/2010 05:40 PM)
h1. PDB to Model
The user is able to retrieve pdb models from the Protein Data Bank and generate a 3D density volume from the atomic model.
h2. General Workflow:
*To launch:*
# The user enters the PDB ID (and check on the "use biological unit" check box if desired)
# The user decides the resolution of the density model (typically filter to 15 - 25 Angstrom resolution)
# The user selects the symmetry of the model
# The user selects the pixel size for the model
# The user selects the box size. Note: the user needs to make sure that the box size is sufficiently large to accommodate the 3D volume to be generated.
*Output:*
# Once the model is generated, it will be deposited under "3d Density Volumes"
# The user then assess the quality of the model and decides whether to convert the volume into an initial model
h2. Notes, Comments, and Suggestions:
!http://emg.nysbc.org/attachments/304/Picture_22.png!