PDB to Model » History » Revision 4
Revision 3 (Anke Mulder, 07/08/2010 05:40 PM) → Revision 4/7 (Anke Mulder, 07/08/2010 05:40 PM)
h1. PDB to Model The user is able to retrieve pdb models from the Protein Data Bank and generate a 3D density volume from the atomic model. h2. General Workflow: *To launch:* # The user enters the PDB ID (and check on the "use biological unit" check box if desired) # The user decides the resolution of the density model (typically filter to 15 - 25 Angstrom resolution) # The user selects the symmetry of the model # The user selects the pixel size for the model # The user selects the box size. Note: the user needs to make sure that the box size is sufficiently large to accommodate the 3D volume to be generated. *Output:* # Once the model is generated, it will be deposited under "3d Density Volumes" # The user then assess the quality of the model and decides whether to convert the volume into an initial model h2. Notes, Comments, and Suggestions: !http://emg.nysbc.org/attachments/277/Picture_81.png! ______ [[CTF Estimation|< CTF Estimation]] | [[Image Assessment|Image Assessment >]] ______ !http://emg.nysbc.org/attachments/304/Picture_22.png!