Processing Server External Packages Installation » History » Revision 23
Revision 22 (Anchi Cheng, 01/31/2018 01:34 AM) → Revision 23/28 (Anchi Cheng, 12/13/2018 10:00 AM)
{{include(Package_executable_alias_name_in_Appion)}}
h2. Installation
[[External Package requirement of Appion scripts]]
h3. Required for preprocessing pipeline up to stack making for Relion/CryoSparc
# [[Configure .appion.cfg]]
# [[Install External Packages]]
# [[Install_motioncor2_shared|MotionCor2]]
# [[Install Gctf]] dosefgpu_driftcorr|MotionCorr]]
# [[Install Grigorieff lab software]]
h3. Recommended for preprocessing pipelin particle picking Gctf]]
# [[Compile FindEM]]
h3. Required for 2D classification
# [[Install EMAN]] (Only works for CentOS 6)
# [[Install EMAN2]]
# [[Install SPIDER]]
# [[Install Xmipp]] (Xmipp2 Only works for CentOS 6)
# [[Install UCSF Chimera]]
# [[Install Grigorieff lab software]]
# [[Compile FindEM]]
# [[Install Ace2]]
# [[Install Imod]]
# [[Install Protomo2]]
# [[Install EM Hole Finder]]
h3. Older packages, install only if you still want to use them
# [[Install dosefgpu_driftcorr|MotionCorr]] (optional)
# [[Install SIMPLE]]
# [[Test Appion]]