Appion

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h2. Installation

[[External Package requirement of Appion scripts]]

h3. Required for preprocessing pipeline up to stack making for Relion/CryoSparc

# [[Configure .appion.cfg]]

# [[Install External Packages]]

# [[Install_motioncor2_shared|MotionCor2]]

# [[Install Gctf]]

# Install CtfFind. See [[Install Grigorieff lab software]]

h3. Recommended for preprocessing pipelin particle picking

# [[Compile FindEM]]

h3. Required for 2D classification and other functions

# [[Install EMAN]] (Only works for CentOS 6)

# [[Install EMAN2]]

# [[Install SPIDER]]

# [[Install Xmipp]] (Xmipp2 Only works for CentOS 6)

# [[Install UCSF Chimera]]

# [[Install Ace2]]

# [[Install Imod]]

# [[Install Protomo2]]

# [[Install EM Hole Finder]]

h3. Older packages, install only if you still want to use them

# [[Install dosefgpu_driftcorr|MotionCorr]] (optional)

# [[Install SIMPLE]]

h3. Testing

# [[Test Appion]]