Project

General

Profile

Edit History

Start with existing CentOS installation » History » Version 73

Amber Herold, 04/06/2010 03:03 PM

1 25 Amber Herold 
h1. Start with existing CentOS 5.3 64-bit installation
2 5 Amber Herold 





    3
    
    
    
{{>toc}}





    4
    1
    Amber Herold
    





    5
    69
    Amber Herold
    
h2. 1 Download additional software 





    6
    2
    Amber Herold
    





    7
    56
    Amber Herold
    
[[Download additional Software]]





    8
    1
    Amber Herold
    





    9
    24
    Amber Herold
    
----





    10
    1
    Amber Herold
    





    11
    69
    Amber Herold
    
h2. 2 Database Server Installation





    12
    
    
    
 





    13
    55
    Amber Herold
    





    14
    
    
    
[[Setup MySQL database]]





    15
    
    
    





    16
    1
    Amber Herold
    
----





    17
    55
    Amber Herold
    





    18
    69
    Amber Herold
    
h2. 3 Processing Server Installation 





    19
    55
    Amber Herold
    





    20
    47
    Amber Herold
    





    21
    49
    Amber Herold
    
[[Setup Appion programs]]





    22
    
    
    





    23
    57
    Amber Herold
    
----





    24
    41
    Amber Herold
    





    25
    69
    Amber Herold
    
h2. 4 Web Server Installation





    26
    13
    Amber Herold
    





    27
    58
    Amber Herold
    





    28
    60
    Amber Herold
    
Refer to [[Web Server Installation]]





    29
    
    
    





    30
    59
    Amber Herold
    





    31
    2
    Amber Herold
    
h3. Initialize database tables from the web tools 





    32
    
    
    





    33
    
    
    
Please consult [[Start_with_existing_ANY_Linux_flavor_OS#4-Create-a-test-project-and-processing-database|Create a test project and processing database]]





    34
    13
    Amber Herold
    





    35
    
    
    
----





    36
    1
    Amber Herold
    





    37
    69
    Amber Herold
    
h2. 5 Install external packages 





    38
    2
    Amber Herold
    





    39
    
    
    
*Please follow individual package installation instruction provided with them*





    40
    
    
    





    41
    1
    Amber Herold
    
h3. Compile Xmipp for OpenMPI 





    42
    13
    Amber Herold
    





    43
    
    
    
[[Install Xmipp]]





    44
    2
    Amber Herold
    





    45
    
    
    
----





    46
    56
    Amber Herold
    





    47
    69
    Amber Herold
    
h2. 6 Install a PBS job submission system





    48
    51
    Amber Herold
    





    49
    2
    Amber Herold
    
[[Install PBS]]





    50
    56
    Amber Herold
    





    51
    
    
    
----





    52
    61
    Amber Herold
    





    53
    69
    Amber Herold
    
h2. 7 Do testing (Start at 4 of any flavor)





    54
    61
    Amber Herold
    





    55
    64
    Amber Herold
    
[[Start_with_existing_ANY_Linux_flavor_OS#4-Create-a-test-project-and-processing-database|Get started with a project]]





    56
    65
    Amber Herold
    
This has some repeated information.





    57
    
    
    
Basically need to do the following:





    58
    
    
    





    59
    
    
    
# Add a group





    60
    
    
    
# Add a user





    61
    
    
    
# Add instruments





    62
    
    
    
# Create a project





    63
    
    
    
# Create the project database





    64
    
    
    
# Upload images to a new session





    65
    
    
    
# View the images





    66
    61
    Amber Herold
    
----