Test page » History » Version 2
Anke Mulder, 06/14/2010 12:20 PM
| 1 | 2 | Anke Mulder | H1 TEST PAGE!!!! |
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| 3 | 1 | Anke Mulder | h1. Appion Processing |
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| 5 | ## [[Terminology]] |
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| 6 | ## [[Common Workflow]] |
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| 7 | 2 | Anke Mulder | ### [[Step by Step Guide]] |
| 8 | ### [[Quality Assessment]] |
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| 9 | 1 | Anke Mulder | ## [[Processing Cluster Login]] |
| 10 | ## [[Particle Selection]] |
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| 11 | 2 | Anke Mulder | ### [[Template Picking]] |
| 12 | ### [[Dog Picking]] |
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| 13 | ### [[Manual Picking]] |
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| 14 | ### [[Repeat from other session]] |
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| 15 | ### [[Random Conical Tilt Picking]] |
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| 16 | 1 | Anke Mulder | **** [[Align and Edit Tilt Pairs]] |
| 17 | **** [[Auto Align Tilt Pairs]] |
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| 18 | ## [[CTF Estimation]] |
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| 19 | 2 | Anke Mulder | ### [[Ace Estimation]] |
| 20 | ### [[Ace 2 Estimation]] |
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| 21 | ### [[CtfFind Estimation]] |
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| 22 | ### [[Repeat from other session]] |
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| 23 | 1 | Anke Mulder | ## [[Stacks]] |
| 24 | 2 | Anke Mulder | ### [[Stack creation]] |
| 25 | ### [[more stack tools]] |
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| 26 | #### [[Combine Stacks]] |
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| 27 | #### [[View Stacks]] |
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| 28 | 1 | Anke Mulder | ***** [[Filter by MeanSTDev]] |
| 29 | ***** [[Center Particles]] |
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| 30 | ***** [[Sort Junk]] |
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| 31 | ***** [[Create Substack]] |
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| 32 | 2 | Anke Mulder | #### [[Alignment SubStacks]] |
| 33 | #### [[ Jumpers SubStack]] |
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| 34 | #### [[Convert Stack into Particle Picks]] |
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| 35 | 1 | Anke Mulder | ## [[Particle Alignment]] |
| 36 | ### [[Run Alignment]] |
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| 37 | **** [[Xmipp Maximum Likelihood Alignment]] |
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| 38 | **** [[Spider Reference-free Alignment]] |
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| 39 | **** [[Spider Reference-based Alignment]] |
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| 40 | **** [[Ed's Iteration Alignment]] |
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| 41 | **** [[Xmipp Reference-based Maximum Likelihood Alignment]] |
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| 42 | ### [[Run Feature Analysis]] |
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| 43 | **** [[Spider Coran Classification]] |
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| 44 | **** [[Xmipp Kerden Self-Organizing Map]] |
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| 45 | **** [[Xmipp Rotational Kerden Self-Organizing Map]] |
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| 46 | ### [[Run Particle Clustering]] |
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| 47 | ## [[Ab Initio Reconstruction]] |
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| 48 | 2 | Anke Mulder | ### [[RCT Volume]] |
| 49 | ### [[OTR Volume]] |
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| 50 | ### [[EMAN Common Lines]] |
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| 51 | ### [[IMAGIC Angular Reconstitution]] |
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| 52 | 1 | Anke Mulder | ## [[Refine Reconstruction]] |
| 53 | 2 | Anke Mulder | ### [[EMAN Refinement]] |
| 54 | ### [[Frealign Refinement]] |
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| 55 | ### [[SPIDER Refinement]] |
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| 56 | ### [[IMAGIC Refinement]] |
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| 57 | 1 | Anke Mulder | ## [[Tomography]] |
| 58 | ### [[Align tilt series]] |
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| 59 | ### [[Create full tomogram]] |
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| 60 | ### [[Upload tomogram]] |
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| 61 | ### [[Create tomogram subvolume]] |
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| 62 | ### [[Average subvolumes]] |
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| 63 | ## [[Import Tools]] |
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| 64 | 2 | Anke Mulder | ### [[PDB to Model]] |
| 65 | ### [[EMDB to Model]] |
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| 66 | ### [[Upload Particles]] |
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| 67 | ### [[Upload Template]] |
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| 68 | ### [[Upload Model]] |
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| 69 | ### [[Upload More Images]] |
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| 70 | ### [[Upload Stack]] |
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| 71 | 1 | Anke Mulder | ## [[Image Assessment]] |
| 72 | 2 | Anke Mulder | ### [[Web Img Assessment]] |
| 73 | ### [[Multi Img Assessment]] |
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| 74 | ### [[Run Image Rejector]] |
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| 75 | 1 | Anke Mulder | ## [[Region Mask Creation]] |
| 76 | 2 | Anke Mulder | ### [[Manual Masking]] |
| 77 | 1 | Anke Mulder | ## [[Synthetic Data]] |
| 78 | 2 | Anke Mulder | ### [[Synthetic Dataset Creation]] |
| 79 | 1 | Anke Mulder | |
| 80 | 2 | Anke Mulder | ## [[test page]] |
| 81 | 1 | Anke Mulder | |
| 82 | !http://emg.nysbc.org/attachments/282/Picture_83.png! |
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| 83 | !http://emg.nysbc.org/attachments/277/Picture_81.png! |
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| 89 | ______ |
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| 91 | [[Appion and Leginon Database Tools|< Appion and Leginon Database Tools]] |
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| 93 | ______ |