Upload full tomogram » History » Revision 5
Revision 4 (Anke Mulder, 06/03/2010 06:41 PM) → Revision 5/17 (Anke Mulder, 06/03/2010 06:43 PM)
h1. Upload tomogram !http://emg.nysbc.org/attachments/273/Picture_71.png! h2. General Workflow: # Select the tiltseries for which a tomogram is to be calculated. # Select the alignment run from [[Align tilt series]] to be used. # Check the run name and enter a description. # To submit the job to the cluster click the "Create Full Tomogram" button. Alternatively, click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell. !http://emg.nysbc.org/attachments/274/Picture_74.png! # If your job has been submitted to the cluster, a page will appear with a link "Check status of job", which allows tracking of the job via its log-file. This link is also accessible from the "1 running" option under the "Create full tomogram" submenu in the appion sidebar. # Now click on the "1 Complete" link under the "Create full tomogram" submenu. This opens a summary of all tomograms that have been calculated for this dataset. !http://emg.nysbc.org/attachments/275/Picture_77.png! # Clicking on the "id" opens a summary page for the calculated tomogram that includes input parameters and file directory paths. # In order to [[Upload full tomogram|upload this tomogram]] for further processing, click on the "Upload full tomogram" link in the Tomography menu on the Appion Sidebar. !http://emg.nysbc.org/attachments/276/Picture_80.png! h2. Notes, Comments, and Suggestions: ______ [[Create full tomogram|< Create Full Tomogram]] | [[Create tomogram subvolume|Create Tomogram Subvolume >]] ______