Version220 » History » Revision 17
Revision 16 (Amber Herold, 07/13/2011 09:59 AM) → Revision 17/21 (Amber Herold, 07/13/2011 10:00 AM)
h1. Appion/Leginon 2.2
Appion/Leginon 2.2 will focus on the Extensibility of Appion.
The goal is to make it easy for outside labs to add new processing modules to the Image Pipeline.
Time Frame ~6 months. Release by June 2011.
"View the current 2.2 Deliverable status":http://emg.nysbc.org/issues?query_id=26
# *PHP_MRC* (#669 #680 #314) (Jim)
# *Complete Appion Wrapper* (#692 #675 #676)
# *Automated testing* #1005 (Amber) (2 weeks)
## Develop test scripts where possible #1007
## Establish a permanent test data set in Data00
# *Expand Auto-Installer* #1015 (Amber)
## add processing packages to installer (spider, frealign, eman)
# *Add modules to pipeline*
## Add Protomo2 (Amber, Eric) #1026
## Add new version of Chimera to existing code to learn what is involved #82 #25
## Chose other modules to add after code changes
## See if StokesLabProcedure will integrate their stuff as a Beta test
## Arne adding XMIPP reconstruction
## Lauren adding Phoelix
## Dmitry adding multi-model refine
# *Refactor Reconstruction code*
## Identify trouble spots
## Focus on readability and modularity
### Reduce terminology overloading
### Work toward a plugin architecture (look for generalizations, api)
# *Create a developers tutorial* #1022
## Add a developers tab to the appion website with links to all the resources available #1021
## Define coding standards (#10)
### python doc string viewer/editor (#162)
### Edit several key files (such as often copied ones) to use standards rigorously as samples #1012
### PHP standards doc #1013
### python standards doc #231
# *Features for public cluster* (release with 2.1.1)
## Users need to be able to run imageuploader remotely. (#274)
## Need to be able to define max number of procs per node for each processing host - Advanced version (#366)
## Add single user sign-on functionality for SDSC roll-out (#1010)
## Investigate how data will move between AMI and SDSC (#1011)
## Having a different password for the imageviewer login and the cluster login is confusing. #364
## Create Appion job submit agent server #1023 (Eric)
### One central job submit point and user (optional).
### Detail report time, user, status, for each job.
h3. Moved to low priority:
# *Expand Auto-Installer* #1015 (Christopher)
## multiple servers #1016
## multiple platforms #1017 - Mac (highest priority), Fedora, Suse, Ubuntu
## more options (Advanced vs Novice user) #1018
## yum, rpm ? #1019
# *Automated testing* #1005 (Amber) (4 weeks)
## Develop unit tests where applicable #1006
## Look into automated GUI test apps #1008
## Static testing for code standards? #1009
# *Better error reporting*
## Biggest problem is jobs management which could be helped with an agent
## Show jobs that are errors (#603)
## Create an error log (#75)
## Remote cluster recons should not return as done if job failed (#531)
# *Improve help tools*
## Add links to redmine wiki help pages to appion pages (#666)
## Add pop up dialogs to report pages as well (#516)
## Image viewer tool tips
# *Create or use an object-relational mapping for PHP* #1020
## Look into Zend library
### "example":http://framework.zend.com/manual/en/zend.db.select.html
# *Discuss a strategy to modify database schema without effect external developers.*
## we will wait and address this when someone is ready to make a change.
# *clean up web interface*
## Remove inconsistencies in web interface (#41 #670)
## Add session name to window so that window are not reloaded from another session (#512)
## Remove select project box in getproject page. (#14)
## Implement sorting algorithm into project management tool. (#13)
## Job Status updates missing on some tools (#994)
## Reorganize the last column in the view project page. (#15)
# *Leginon*
## Feature to measure focus change in a random direction. (#226)
## import preset by searching for session that uses an application (#654)
## Allow averaging of multiple focus measurements (#225)
## Leginon image viewer should cache the FFT images as well. (#217)
## target queue editor (#214)
# *misc*
## Data Location tool-find data and push it to external drive (#954)
## Snapshots of projection views for uploaded models. (#857)
## Put variables from config.php into the database (#699)
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