Wrapper Testing » History » Revision 3
Revision 2 (Amber Herold, 08/23/2010 03:34 PM) → Revision 3/63 (Amber Herold, 08/23/2010 03:36 PM)
h1. Wrapper Testing Issue #828 The following files contain a call to showOrSubmitCommand() or submitAppionJob(). These function calls need to be executed to verify the following: 1. Commands using showOrSubmitCommand should pre-pend the Appion Wrapper Path defined in the config file when both Show Command and Run Command are selected by the user. 2. Commands using submitAppionJob should pre-pend the path when Run Command is selected. 3. Commands using submitAppionJob should NOT pre-pend the path when Just Show Command is selected. In this case, the user will need to manually modify the command prior to executing it to include the wrapper path. |_.Filename|_.uses new showOrSubmitCommand()|_.uses old submitAppionJob()|_.Show Command (pass/fail)|_.Sumbit Command (pass/fail)| |alignSubStack.php|X|||| |applyJunkCutoff.php|X|||| |bootstrappedAngularReconstitution.php|X|||| |centerStack.php|X|||| |coranSubStack.php|X|||| |createmodel.php|X|||| |createSyntheticDataset.php|X|||| |emdb2density.php|X|||| |imagicMSA.php|X|||| |jumpSubStack.php|X|||| |makegoodavg.php|X|||| |multiReferenceAlignment.php|X|||| |pdb2density.php|X|||| |postproc.php|X|||| |prepareFrealign.php|X||pass|pass| |prepareFrealign.php|X|||| |runAppionScript.php.template|X|||| |runMaskMaker.php|X|||| |runMaxLikeAlign.php|X|||| |sortJunk.php|X|||| |subStack.php|X|||| |uploadFrealign.php|X|||| |uploadmodel.php|X|||| |uploadParticles.php|X|||| |uploadrecon.php|X|||| |uploadstack.php|X|||| |uploadtemplate.php|X|||| |uploadTemplateStack.php|X|||| |uploadtomo.php|X|||| |uploadXmippRecon.php|X|||| |imagic3d0.php||X||| |imagic3dRefine.php||X||| |runAce2.php||X||| |runAffinityProp.php||X||| |runClusterCoran.php||X||| |runCombineStacks.php||X||| |runCoranClassify.php||X||| |runCtfEstimate.php||X||| |runDogPicker.php||X|pass|pass| |runDogPicker.php||X||| |runEdIterAlignment.php||X||| |runEmanRefine2d.php||X||| |runImgRejector.php||X||| |runJpgMaker.php||X||| |runKerDenSom.php||X||| |runLoopAgain.php||X||| |runMakeStack2.php||X||| |runMaskMaker.php||X||| |runOtrVolume.php||X||| |runPyAce.php||X||| |runRctVolume.php||X||| |runRefBasedAlignment.php||X||| |runRefBasedMaxlikeAlign.php||X||| |runRotKerDenSom.php||X||| |runSignature.php||X||| |runSpiderNoRefAlignment.php||X||| |runStackIntoPicks.php||X||| |runSubTomogram.php||X||| |runTemplateCorrelator.php||X||| |runTiltAligner.php||X||| |runTiltAutoAligner.php||X||| |runTomoAligner.php||X||| |runTomoAverage.php||X||| |runTomoMaker.php||X||| |runTopolAlign.php||X||| |runUploadMaxLike.php||X||| |uploadimage.php||X|||