Appion

Wrapper Testing » History » Revision 4

Revision 3 (Amber Herold, 08/23/2010 03:36 PM) → Revision 4/63 (Amber Herold, 08/23/2010 03:37 PM)

h1. Wrapper Testing 

 Issue #828 

 The following files contain a call to showOrSubmitCommand() or submitAppionJob(). These function calls need to be executed to verify the following: 

 1. Commands using showOrSubmitCommand should pre-pend the Appion Wrapper Path defined in the config file when both Show Command and Run Command are selected by the user. 
 2. Commands using submitAppionJob should pre-pend the path when Run Command is selected. 
 3. Commands using submitAppionJob should NOT pre-pend the path when Just Show Command is selected. In this case, the user will need to manually modify the command prior to executing it to include the wrapper path.  


 |_.Filename|_.uses new showOrSubmitCommand()|_.uses old submitAppionJob()|_.Show Command (pass/fail)|_.Submit (pass/fail)|_.Sumbit Command (pass/fail)| 
 |alignSubStack.php|X|||| 
 |applyJunkCutoff.php|X|||| 
 |bootstrappedAngularReconstitution.php|X|||| 
 |centerStack.php|X|||| 
 |coranSubStack.php|X|||| 
 |createmodel.php|X|||| 
 |createSyntheticDataset.php|X|||| 
 |emdb2density.php|X|||| 
 |imagicMSA.php|X|||| 
 |jumpSubStack.php|X|||| 
 |makegoodavg.php|X|||| 
 |multiReferenceAlignment.php|X|||| 
 |pdb2density.php|X|||| 
 |postproc.php|X|||| 
 |prepareFrealign.php|X||pass|pass| 
 |runAppionScript.php.template|X|||| 
 |runMaskMaker.php|X|||| 
 |runMaxLikeAlign.php|X|||| 
 |sortJunk.php|X|||| 
 |subStack.php|X|||| 
 |uploadFrealign.php|X|||| 
 |uploadmodel.php|X|||| 
 |uploadParticles.php|X|||| 
 |uploadrecon.php|X|||| 
 |uploadstack.php|X|||| 
 |uploadtemplate.php|X|||| 
 |uploadTemplateStack.php|X|||| 
 |uploadtomo.php|X|||| 
 |uploadXmippRecon.php|X|||| 
 |imagic3d0.php||X||| 
 |imagic3dRefine.php||X||| 
 |runAce2.php||X||| 
 |runAffinityProp.php||X||| 
 |runClusterCoran.php||X||| 
 |runCombineStacks.php||X||| 
 |runCoranClassify.php||X||| 
 |runCtfEstimate.php||X||| 
 |runDogPicker.php||X|pass|pass| 
 |runEdIterAlignment.php||X||| 
 |runEmanRefine2d.php||X||| 
 |runImgRejector.php||X||| 
 |runJpgMaker.php||X||| 
 |runKerDenSom.php||X||| 
 |runLoopAgain.php||X||| 
 |runMakeStack2.php||X||| 
 |runMaskMaker.php||X||| 
 |runOtrVolume.php||X||| 
 |runPyAce.php||X||| 
 |runRctVolume.php||X||| 
 |runRefBasedAlignment.php||X||| 
 |runRefBasedMaxlikeAlign.php||X||| 
 |runRotKerDenSom.php||X||| 
 |runSignature.php||X||| 
 |runSpiderNoRefAlignment.php||X||| 
 |runStackIntoPicks.php||X||| 
 |runSubTomogram.php||X||| 
 |runTemplateCorrelator.php||X||| 
 |runTiltAligner.php||X||| 
 |runTiltAutoAligner.php||X||| 
 |runTomoAligner.php||X||| 
 |runTomoAverage.php||X||| 
 |runTomoMaker.php||X||| 
 |runTopolAlign.php||X||| 
 |runUploadMaxLike.php||X||| 
 |uploadimage.php||X|||