Adding DE-12 to Leginon » History » Version 15
Anchi Cheng, 09/28/2016 07:33 AM
1 | 9 | Anchi Cheng | h1. Installation Guide for DE-12 or DE-20 |
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3 | 9 | Anchi Cheng | h2. DE-12 is on a computer separated from the microscope |
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5 | 9 | Anchi Cheng | Please read [[Using_Leginon_on_a_system_where_the_microscope_and_camera_are_controlled_by_different_computers]] first. |
6 | 1 | Anchi Cheng | |
7 | 9 | Anchi Cheng | h2. Extra Package and Installation |
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9 | 12 | Anchi Cheng | |_.program/package|_.notes| |
10 | |DirectElectronAPI.exe|(Should come with the camera)| |
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11 | |"Google protobuf":http://code.google.com/p/protobuf/|| |
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13 | {{include(portobuf installation instruction)}} |
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16 | 9 | Anchi Cheng | |
17 | h2. instruments.cfg |
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19 | {{include(Instrument.cfg for DE-12)}} |
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20 | height and width should be set according to the model. |
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22 | 14 | Anchi Cheng | h2. orientation setup |
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24 | Change the orientation in pyscope/de.py for frame orientation definition used in movie frame processing. |
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26 | <pre> |
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27 | # frame flipping configuration. |
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28 | # default here is for DE-12 orientation on FEI F20 |
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29 | FRAME_LR_FLIP = True |
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30 | # frame rotate configuration. multiple of 90 degrees if needed |
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31 | # after the flip. Direction + is x to -y. |
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32 | FRAME_ROTATE = 0 |
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33 | 15 | Anchi Cheng | </pre> |
34 | 14 | Anchi Cheng | |
35 | Known values: |
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36 | DE-12 on Tecnai F20: FRAME_LR_FLIP = True, FRAME_ROTATE=0 |
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37 | DE-20 on Tecnai F20: FRAME_LR_FLIP = True, FRAME_ROTATE=-1 |
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39 | 9 | Anchi Cheng | h2. Setup |
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41 | * Create the folder to store the dose fractionation raw frames. Default location is D:\\frames. |
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42 | * Setup [[DDD_raw_frame_file_transfer|raw frame file transfer]] from a network data server. |
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44 | 1 | Anchi Cheng | h2. Testing |
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46 | 9 | Anchi Cheng | h2. Testing with pyscope |
47 | 1 | Anchi Cheng | |
48 | 10 | Anchi Cheng | {{include(DE-12 Installation Pyscope Test)}} |
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50 | 10 | Anchi Cheng | h2. Programs to open before Leginon Client: DE Server |
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52 | See how to use DE camera usage in |
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53 | 11 | Anchi Cheng | |
54 | * [[DE-12 introduction]] Please read this!!! |
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55 | * [[Acquiring summed frame image thru Leginon]] |
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56 | * [[DDD raw frame saving|Triggering raw frame saving]] |
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57 | * [[DDD raw frame file transfer|Transferring raw frame images]] off the solid-state drive of DE-12 during data collection to a network drive. |
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58 | * [[Make DE-12 movie stack|Compiling corrected movie stack]] with Appion using bright and dark images acquired in Leginon |