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Check Cs value match before using Leginon after update » History » Revision 3

Revision 2 (Anchi Cheng, 06/07/2012 01:52 PM) → Revision 3/6 (Anchi Cheng, 06/07/2012 01:57 PM)

h1. Check Cs value match before using Leginon after update 

 Run the following script on any of the computer where you have done the update on. 

 On Linux: 
 <pre> 
 $PYTHONSITEPKG/leginon/cscheck.py 
 </pre> 

 On Windows: 
 <pre> 
 C://Python25/Lib/site-packages/leginon/cscheck.py 
 </pre> 

 You should get a list of microscope where you have saved images on in a Leginon session and the Cs values that you entered using schema-r15653.py. For example, 
 <pre> 
 TEM tecnai1234,Tecnai used in session 12jun07a has Cs value of 2.000e-03 m 
 </pre> 

 schema-r15653.py    Check that against the Cs value in instruments.cfg on the named microscope (tecnai1234 in this case) which is also listed in meters. microscope.    *The two must match.    Otherwise Leginon will complain and you may lose all your old calibrations.* 




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 [[How_to_Update_from_v21_(Microscope_Windows_Computer)| < How to Update from v2.1 (Microscope Windows Computer) ]] 


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