FEI Talos installation specifics¶

IMPORT NOTES¶

Because all interaction with the scope uses COM interface that is only accessible through 32-bit architecture, python running Leginon component is the 32-bit version. Use the 32-bit Windows files (those marked as win32 and certainly not the ones says 64) in http://emg.nysbc.org/projects/leginon/files for these.

Talos On-system UI uses 32-bit python as well. Therefore we just need to install the dependency that is missing in there. The location of this python is

C:\Tecnai\OnSystemUI\Python27

Here is the full list

Python¶

Program	package web site	local copy of win32 installer
Python 2.7*	http://www.python.org	python-2.7.3.msi

Packages using python framework¶

Program	package web site	local copy of win32 installer
Python 2.7.16	https://www.python.org	python-2.7.16.msi
wxPython 2.5.2.8 or newer	https://www.wxpython.org	wxPython2.8-win32-unicode-2.8.12.1-py27.exe
Python Imaging Library (PIL) 1.1.4 or newer	http://www.pythonware.com/products/pil/	PIL-1.1.7.win32-py2.7.exe
NumPy	(use only from our file to match compiled numextension	numpy-1.7.0-win32-python2.7.exe
SciPy 0.5.1 or newer	http://www.scipy.org	scipy-0.11.0-win32-superpack-python2.7.exe

Leginon 3.5 or before

MySQL Python client 1.2 or newer

http://sourceforge.net/projects/mysql-python

MySQL-python-1.2.4b4.win32-py2.7.exe

Leginon 3.6 and up

pyMySQL 0.10.1 (not higher)

https://pypi.org/project/PyMySQL/

pyMySQL-0.10.1-py2.py3-none-any.whl

Program	package web site	local copy of win32 installer
comtypes 0.6.2	http://sourceforge.net/projects/comtypes"	comtypes-0.6.2.win32.exe

The rest of the installation is similar to other FEI systems.

instruments.cfg¶

cs is constant for sperical abberation

For Tecnai series:

[TEM]
class: tecnai.Talos
cs: 2.7e-3

Testing with pyscope¶

In python command

from pyscope import tecnai
t = tecnai.Talos()
t.getMagnification()