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FEI Talos installation specifics » History » Revision 6

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Anchi Cheng, 11/03/2015 06:15 PM


FEI Talos installation specifics

IMPORT NOTES

Because all interaction with the scope uses COM interface that is only accessible through 32-bit architecture, python running Leginon component is the 32-bit version. Use the 32-bit Windows files (those marked as win32 and certainly not the ones says 64) in http://emg.nysbc.org/projects/leginon/files for these.

Talos On-system UI uses 32-bit python as well. Therefore we just need to install the dependency that is missing in there. The location of this python is

C:\Tecnai\OnSystemUI\Python27

Here is the full list

Python

Program package web site local copy of win32 installer
Python 2.7* http://www.python.org python-2.7.3.msi

Packages using python framework

Program package web site local copy of win32 installer
Python 2.7.16 https://www.python.org python-2.7.16.msi
wxPython 2.5.2.8 or newer https://www.wxpython.org wxPython2.8-win32-unicode-2.8.12.1-py27.exe
Python Imaging Library (PIL) 1.1.4 or newer http://www.pythonware.com/products/pil/ PIL-1.1.7.win32-py2.7.exe
NumPy (use only from our file to match compiled numextension numpy-1.7.0-win32-python2.7.exe
SciPy 0.5.1 or newer http://www.scipy.org scipy-0.11.0-win32-superpack-python2.7.exe
Leginon 3.5 or before
MySQL Python client 1.2 or newer http://sourceforge.net/projects/mysql-python MySQL-python-1.2.4b4.win32-py2.7.exe
Leginon 3.6 and up
pyMySQL 0.10.1 (not higher) https://pypi.org/project/PyMySQL/ pyMySQL-0.10.1-py2.py3-none-any.whl

Program package web site local copy of win32 installer
comtypes 0.6.2 http://sourceforge.net/projects/comtypes" comtypes-0.6.2.win32.exe

The rest of the installation is similar to other FEI systems.

instruments.cfg

cs is constant for sperical abberation

For Tecnai series:

[TEM]
class: tecnai.Talos
cs: 2.7e-3

Testing with pyscope

In python command

from pyscope import tecnai
t = tecnai.Talos()
t.getMagnification()

Trouble Shooting

unable to initializ Tecnai interface error

Programs to open before Leginon Client: None

Updated by Anchi Cheng about 9 years ago · 6 revisions