FEI TecnaiTitan installation specifics » History » Version 19
Anchi Cheng, 03/13/2017 04:36 PM
1 | 18 | Anchi Cheng | h1. FEI Tecnai Titan installation specifics |
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2 | 1 | Anchi Cheng | |
3 | 15 | Anchi Cheng | h2. Install win32 version of python subpackages |
4 | 1 | Anchi Cheng | |
5 | 19 | Anchi Cheng | Use the 32-bit Windows files (those marked as win32 and certainly not the ones says 64) in http://emg.nysbc.org/projects/leginon/files for these. |
6 | 15 | Anchi Cheng | |
7 | Here is the full list |
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8 | {{include(Windows_32_External_Package_Installers_Common)}} |
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9 | 12 | Anchi Cheng | {{include(Comtypes_installer)}} |
10 | 1 | Anchi Cheng | |
11 | 15 | Anchi Cheng | h2. Required scripting from FEI |
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13 | 1 | Anchi Cheng | |TEM Scripting or Tecnai Scripting|Request this when purchasing the microscope|Required| |
14 | |TomMoniker Scripting|Should come with TEM Scripting|Required| |
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15 | |Low Dose Server Library|Should come with the microscope if low dose kit was purchased|Required only if you want to use low dose kit with Leginon's Manual Application| |
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16 | 2 | Anchi Cheng | |
17 | 13 | Anchi Cheng | h3. Run checkcom.py |
18 | 2 | Anchi Cheng | |
19 | * From a command line window: |
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20 | <pre>cd C:\python27\Lib\site-packages\pyscope |
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21 | 14 | Anchi Cheng | C:\python27\python.exe checkcom.py</pre> |
22 | 2 | Anchi Cheng | |
23 | 13 | Anchi Cheng | * The output should at least find typelib for |
24 | 2 | Anchi Cheng | <pre> |
25 | 13 | Anchi Cheng | TEM Scripting |
26 | 2 | Anchi Cheng | </pre> |
27 | 13 | Anchi Cheng | and |
28 | 10 | Anchi Cheng | <pre> |
29 | 13 | Anchi Cheng | TOM Moniker |
30 | 2 | Anchi Cheng | </pre> |
31 | |||
32 | h2. instruments.cfg |
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33 | |||
34 | 7 | Anchi Cheng | cs is *constant for sperical abberation* |
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36 | For Tecnai series: |
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37 | 2 | Anchi Cheng | <pre> |
38 | [TEM] |
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39 | class: tecnai.Tecnai |
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40 | cs: 2.0e-3 |
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41 | 1 | Anchi Cheng | </pre> |
42 | |||
43 | 7 | Anchi Cheng | For Titan: |
44 | <pre> |
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45 | [TEM] |
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46 | class: tecnai.Tecnai |
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47 | cs: 2.7e-3 |
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48 | </pre> |
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49 | 1 | Anchi Cheng | |
50 | 7 | Anchi Cheng | For Krios (different compustage) |
51 | <pre> |
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52 | [TEM] |
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53 | class: tecnai.Krios |
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54 | cs: 2.7e-3 |
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55 | </pre> |
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56 | 1 | Anchi Cheng | |
57 | 16 | Anchi Cheng | For Krios EF mode, treated as a separate instrument. i.e. add |
58 | <pre> |
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59 | [TEM] |
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60 | class: tecnai.EFKrios |
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61 | cs: 2.7e-3 |
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62 | </pre> |
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63 | |||
64 | 1 | Anchi Cheng | h2. Testing with pyscope |
65 | 2 | Anchi Cheng | |
66 | 15 | Anchi Cheng | For Tecnai series In python command |
67 | 8 | Anchi Cheng | <pre> |
68 | 1 | Anchi Cheng | from pyscope import tecnai |
69 | 7 | Anchi Cheng | t = tecnai.Tecnai() |
70 | 1 | Anchi Cheng | t.getMagnification() |
71 | 7 | Anchi Cheng | </pre> |
72 | 15 | Anchi Cheng | |
73 | 1 | Anchi Cheng | For Krios |
74 | <pre> |
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75 | from pyscope import tecnai |
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76 | 15 | Anchi Cheng | t = tecnai.Krios() |
77 | t.getMagnification() |
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78 | </pre> |
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79 | |||
80 | For Krios with EF-TEM mode, add also |
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81 | <pre> |
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82 | from pyscope import tecnai |
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83 | t = tecnai.EFKrios() |
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84 | 2 | Anchi Cheng | t.getMagnification() |
85 | </pre> |
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86 | |||
87 | 6 | Anchi Cheng | You should get the current magnification at the microscope when the main viewing screen is up |
88 | 5 | Anchi Cheng | |
89 | 11 | Anchi Cheng | h2. Trouble Shooting |
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91 | [[unable to initializ Tecnai interface error]] |
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92 | |||
93 | 5 | Anchi Cheng | h2. Programs to open before Leginon Client: None |