Getting Started¶

Full (Super User) Manual - Getting Started¶

These steps are a general overview of the entire procedure involving
installation, microscope alignment, calibrations, and using Leginon applications (e.g.
Manual, Calibrations, MSI).

Getting Started as a Super User

Installation (System Administrator) - Getting Started¶

These steps are geared soley towards the system administator(s) that will installing
Leginon and setting it up initially for the rest of the Leginon users that need not be
concerned with these details.

Getting Started as a System Administrator

Short Manual (Basic Leginon User) - Getting Started¶

These steps are intended to help the basic Leginon user who will operate Leginon (and
not care about installation or the first-time calibrations).

Getting Started as a basic Leginon user

Short Manual (Basic Leginon User) - Getting Started¶

These steps are intended to help the basic Leginon user who will operate Leginon (and
not care about installation or the first-time calibrations).

1. Align the microscope¶

Refer to <link linkend="microscope_setup">Microscope Set-up</link>

2. Recording images with Low Dose Kit on the microscope¶

Refer to using the <link linkend="manual_app">Manual</link> application

3. Set-up and run MSI¶

Refer to <link linkend="MISQuickStart">MSI quick set-up checklist</link>

AND

Refer to <link linkend="leg1operation">MSI Operation</link>

4. Help yourself and others¶

Refer to <link linkend="MSI_troubleshooting">User Trouble Shooting</link>

---

< Minimum Requirements and current NRAMM setup

---