Getting Started » History » Revision 6
Revision 5 (Amber Herold, 04/27/2010 04:11 PM) → Revision 6/13 (Amber Herold, 04/27/2010 04:12 PM)
h1. Getting Started
h2. Full (Super User) Manual - Getting Started
These steps are a general overview of the entire procedure involving
installation, microscope alignment, calibrations, and using Leginon applications (e.g.
Manual, Calibrations, MSI).
[[Getting Started as a Super User]]
h2. Installation (System Administrator) - Getting Started
These steps are geared soley towards the system administator(s) that will installing
Leginon and setting it up initially for the rest of the Leginon users that need not be
concerned with these details.
[[Getting Started as a System Administrator]]
h2. Short Manual (Basic Leginon User) - Getting Started
These steps are intended to help the basic Leginon user who will operate Leginon (and
not care about installation or the first-time calibrations).
[[Getting Started as a basic Leginon user]]
h2. Installation (System Administrator) - Getting Started
These steps are geared soley towards the system administator(s) that will installing
Leginon and setting it up initially for the rest of the Leginon users that need not be
concerned with these details.
Refer to <link linkend="Inst_troubleshooting">Installation Trouble Shooting</link>, and
Leginon "Bulletin
Board":http://emg.nysbc.org/bb/viewforum.php?f=2 .
h3. 1. Download Leginon System
Leginon Home: "http://www.leginon.org/":http://www.leginon.org/
Direct links to downloads:
* "http://emg.nysbc.org/software/leginon/":http://emg.nysbc.org/software/leginon/
* "http://emg.nysbc.org/software/dbemtools/":http://emg.nysbc.org/software/dbemtools/
* "http://emg.nysbc.org/software/mrctools":http://emg.nysbc.org/software/mrctools .
h3. 2. Install Leginon System
Refer to the <link linkend="completeinstall">Complete Installation</link>
h3. 3. Add Users, Groups, Instruments, Calibrations, and Applications
Refer to <link linkend="addusers">Administration</link>
h3. 4. Test run
Refer to <link linkend="runleg_chapter">Start Leginon</link> chapter for test run on
the microscope and on a remote computer.
h2. Short Manual (Basic Leginon User) - Getting Started
These steps are intended to help the basic Leginon user who will operate Leginon (and
not care about installation or the first-time calibrations).
h3. 1. Align the microscope
Refer to <link linkend="microscope_setup">Microscope Set-up</link>
h3. 2. Recording images with Low Dose Kit on the microscope
Refer to using the <link linkend="manual_app">Manual</link> application
h3. 3. Set-up and run MSI
Refer to <link linkend="MISQuickStart">MSI quick set-up checklist</link>
AND
Refer to <link linkend="leg1operation">MSI Operation</link>
h3. 4. Help yourself and others
Refer to <link linkend="MSI_troubleshooting">User Trouble Shooting</link>
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[[Minimum Requirements and current NRAMM setup|< Minimum Requirements and current NRAMM setup]]
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