Leginon

h1. Getting Started as a Super User

h2. Full (Super User) Manual - Getting Started

These steps are a general overview of the entire procedure involving

installation, microscope alignment, calibrations, and using Leginon applications (e.g.

Manual, Calibrations, MSI).

h3. 1. Download Leginon System

"http://www.leginon.org/":http://www.leginon.org/

h3. 2. Install Leginon System

Refer to the <link linkend="completeinstall">Complete Installation</link>

h3. 3. Add Users, Groups, Instruments, Calibrations, and Applications

Refer to <link linkend="addusers">Administration</link>

For advanced Leginon users who would like to create an application, see the <link

linkend="createapp">application creation chapter</link>.

h3. 4. Test run

Refer to <link linkend="runleg_chapter">Start Leginon</link> chapter for test run on

the microscope and on a remote computer.

h3. 5. Align the microscope

Refer to <link linkend="microscope_setup">Microscope Set-up</link>

h3. 6. Calibrate Leginon for the microscope

Refer to the <link linkend="calapp_chapter">Calibrations chapter</link>

h3. 7. Set-up and Run MSI

Refer to <link linkend="MISQuickStart">MSI quick set-up checklist</link>

AND

Refer to <link linkend="leg1operation">MSI Operation</link>

h3. 8. Help yourself and others

Refer to <link linkend="Inst_troubleshooting">Installation Trouble Shooting</link>,

<link linkend="MSI_troubleshooting">User Trouble Shooting</link> and Leginon  "Bulletin Board":http://emg.nysbc.org/bb/viewforum.php?f=2 .

h3. 9. Know the details

For advanced Leginon users who would like to create an application, see the <link

linkend="createapp">application creation chapter</link>.

Refer to <link linkend="Nodes">Node Description</link>

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[[Getting Started as a System Administrator|Getting Started as a System Administrator >]]

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