Project

General

Profile

Leginon Homepage » History » Version 29

Jim Pulokas, 03/04/2011 11:06 AM

1 8 Neil Voss
h1. Leginon Main Page
2 1 Eric Hou
3 8 Neil Voss
!>http://lh5.google.com/vossman77/RzJbEE3GhuI/AAAAAAAAASY/SSaOA7FZKwI/nramm.jpg?imgdl=1!:http://nramm.scripps.edu
4
5
h2. Overview
6
7
Leginon is a system designed for automated collection of images from a transmission electron microscope. 
8
9
h2. Contact information:
10
11 14 Amber Herold
Please email _amisoftware@scripps.edu_ with general concerns.
12 8 Neil Voss
13 16 Anchi Cheng
Report bugs and request features as "New issues":http://emg.nysbc.org/projects/leginon/issues/new at this site.
14 12 Anchi Cheng
15 22 Amber Herold
Use "Leginon user forum":http://emg.nysbc.org/projects/leginon/boards for asking questions and to see answers to previous questions.
16 12 Anchi Cheng
17 17 Anchi Cheng
h2. Software Installation Manual and User Guide:
18 8 Neil Voss
19 18 Eric Hou
* To learn all the details, start with "An introduction to Leginon":http://emg.nysbc.org/projects/leginon/wiki/An_introduction_to_Leginon
20 11 Anchi Cheng
21 19 Eric Hou
* To install Leginon, see "Getting Started as a System Administrator":http://emg.nysbc.org/projects/leginon/wiki/Getting_Started_as_a_System_Administrator
22 11 Anchi Cheng
23 26 Anchi Cheng
* To learn how to use Leginon for everyday work, see "Getting Started as a basic Leginon user":http://emg.nysbc.org/projects/leginon/wiki/Getting_Started_as_a_basic_Leginon_user
24 11 Anchi Cheng
25 21 Eric Hou
* "Full Leginon Manual Table of Contents":http://emg.nysbc.org/projects/leginon/wiki/Leginon_Manual
26 8 Neil Voss
27 29 Jim Pulokas
h2. Developer Guide:
28
29
* [[Leginon Developer Guide]]
30
31 8 Neil Voss
h2. Publications:
32
33
h3. Primary Publication to Cite:
34 1 Eric Hou
35 9 Neil Voss
* "Automated Molecular Microscopy: The New Leginon System" (2005), C Suloway, J Pulokas, D Fellmann, A Cheng, F Guerra, J Quispe, S Stagg, CS Potter and B Carragher. Journal of Structural Biology 151 (1): pp. 41-60.
36 1 Eric Hou
37
h3. Additional References:
38
39 9 Neil Voss
* "Rapid, routine structure determination of macromolecular assemblies using electron microscopy: Current progress and remaining challenges", B. Carragher, D. Fellmann, F. Guerra, R.A. Milligan, F. Mouche, J. Pulokas, J. Quispe, C. Suloway, Y. Zhu and C.S. Potter, J. of Synchrotron radiation. 11, pp 83-85 (2004)
40 8 Neil Voss
41 9 Neil Voss
* "A relational database for cryoEM: Experience at one year and 50,000 images", D. Fellmann, J. Pulokas, R.A. Milligan, B. Carragher and C.S. Potter, J. of Structural Biology, 137, p. 273-282 (2002)
42
43
* "Leginon: An automated system for acquisition of images from vitreous ice specimens", B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas and A. Reilein, Journal of Structual Biology 132, 33-45 (2000).
44
45
* "Leginon: A system for fully automated acquisition of 1000 micrographs a day", C.S. Potter, H. Chu, B. Frey, C. Green, N. Kisseberth, T.J. Madden, K.L. Miller, K. Nahrstedt, J. Pulokas, A. Reilein, D. Tcheng, D. Weber and B. Carragher, Ultramicroscopy 77 (1999) 153-161. 
46
47
* "Automated cryoEM data acquisition and analysis of 284742 particles of GroEL." (2006) Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS. J Struct Biol. 155 (3): pp. 470-81. PMID: 16762565.
48 8 Neil Voss
49
h2. Software Availability and Licensing Information
50
51 10 Neil Voss
Leginon is released under the "Apache License, Version 2.0":http://www.apache.org/licenses/LICENSE-2.0
52 23 Amber Herold
53 28 Amber Herold
Instructions for [[Using Leginon at Scripps]].
54 25 Jim Pulokas
55
h2. Miscellaneous
56
 
57
[[Leginon Brainstorm]]