Leginon Homepage » History » Version 32
Sargis Dallakyan, 02/10/2015 03:50 PM
| 1 | 8 | Neil Voss | h1. Leginon Main Page |
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| 2 | 1 | Eric Hou | |
| 3 | 8 | Neil Voss | |
| 4 | h2. Overview |
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| 5 | |||
| 6 | Leginon is a system designed for automated collection of images from a transmission electron microscope. |
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| 7 | |||
| 8 | h2. Contact information: |
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| 9 | |||
| 10 | 1 | Eric Hou | |
| 11 | 32 | Sargis Dallakyan | Report bugs and request features as "New issues":/redmine/projects/leginon/issues/new at this site. |
| 12 | 12 | Anchi Cheng | |
| 13 | 32 | Sargis Dallakyan | Use "Leginon user forum":/redmine/projects/leginon/boards for asking questions and to see answers to previous questions. |
| 14 | 1 | Eric Hou | |
| 15 | h2. Software Installation Manual and User Guide: |
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| 16 | |||
| 17 | 32 | Sargis Dallakyan | * To learn all the details, start with "An introduction to Leginon":/redmine/projects/leginon/wiki/An_introduction_to_Leginon |
| 18 | 11 | Anchi Cheng | |
| 19 | 32 | Sargis Dallakyan | * To install Leginon, see "Getting Started as a System Administrator":/redmine/projects/leginon/wiki/Getting_Started_as_a_System_Administrator |
| 20 | 11 | Anchi Cheng | |
| 21 | 32 | Sargis Dallakyan | * To learn how to use Leginon for everyday work, see "Getting Started as a basic Leginon user":/redmine/projects/leginon/wiki/Getting_Started_as_a_basic_Leginon_user |
| 22 | 11 | Anchi Cheng | |
| 23 | 32 | Sargis Dallakyan | * "Full Leginon Manual Table of Contents":/redmine/projects/leginon/wiki/Leginon_Manual |
| 24 | 8 | Neil Voss | |
| 25 | 29 | Jim Pulokas | h2. Developer Guide: |
| 26 | |||
| 27 | * [[Leginon Developer Guide]] |
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| 28 | |||
| 29 | 8 | Neil Voss | h2. Publications: |
| 30 | |||
| 31 | h3. Primary Publication to Cite: |
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| 32 | 1 | Eric Hou | |
| 33 | 9 | Neil Voss | * "Automated Molecular Microscopy: The New Leginon System" (2005), C Suloway, J Pulokas, D Fellmann, A Cheng, F Guerra, J Quispe, S Stagg, CS Potter and B Carragher. Journal of Structural Biology 151 (1): pp. 41-60. |
| 34 | 1 | Eric Hou | |
| 35 | h3. Additional References: |
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| 36 | |||
| 37 | 9 | Neil Voss | * "Rapid, routine structure determination of macromolecular assemblies using electron microscopy: Current progress and remaining challenges", B. Carragher, D. Fellmann, F. Guerra, R.A. Milligan, F. Mouche, J. Pulokas, J. Quispe, C. Suloway, Y. Zhu and C.S. Potter, J. of Synchrotron radiation. 11, pp 83-85 (2004) |
| 38 | 8 | Neil Voss | |
| 39 | 9 | Neil Voss | * "A relational database for cryoEM: Experience at one year and 50,000 images", D. Fellmann, J. Pulokas, R.A. Milligan, B. Carragher and C.S. Potter, J. of Structural Biology, 137, p. 273-282 (2002) |
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| 41 | * "Leginon: An automated system for acquisition of images from vitreous ice specimens", B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas and A. Reilein, Journal of Structual Biology 132, 33-45 (2000). |
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| 42 | |||
| 43 | * "Leginon: A system for fully automated acquisition of 1000 micrographs a day", C.S. Potter, H. Chu, B. Frey, C. Green, N. Kisseberth, T.J. Madden, K.L. Miller, K. Nahrstedt, J. Pulokas, A. Reilein, D. Tcheng, D. Weber and B. Carragher, Ultramicroscopy 77 (1999) 153-161. |
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| 44 | |||
| 45 | * "Automated cryoEM data acquisition and analysis of 284742 particles of GroEL." (2006) Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS. J Struct Biol. 155 (3): pp. 470-81. PMID: 16762565. |
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| 46 | 8 | Neil Voss | |
| 47 | h2. Software Availability and Licensing Information |
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| 48 | |||
| 49 | 10 | Neil Voss | Leginon is released under the "Apache License, Version 2.0":http://www.apache.org/licenses/LICENSE-2.0 |
| 50 | 23 | Amber Herold | |
| 51 | 28 | Amber Herold | Instructions for [[Using Leginon at Scripps]]. |
| 52 | 25 | Jim Pulokas | |
| 53 | h2. Miscellaneous |
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| 55 | 30 | Jim Pulokas | [[EM Workshop - Leginon Users Group]] |
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| 57 | 25 | Jim Pulokas | [[Leginon Brainstorm]] |