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Leginon Homepage » History » Version 8

Neil Voss, 05/26/2010 11:34 AM

1 8 Neil Voss 
h1. Leginon Main Page
2 1 Eric Hou 





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    Neil Voss
    
!>http://lh5.google.com/vossman77/RzJbEE3GhuI/AAAAAAAAASY/SSaOA7FZKwI/nramm.jpg?imgdl=1!:http://nramm.scripps.edu





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h2. Overview





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Leginon is a system designed for automated collection of images from a transmission electron microscope. 





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h2. Contact information:





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Please email _amisoftware@scripps.edu_ with any questions.





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h2. Software Installation:





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bq. see [[Complete Installation|Complete Appion Installation]]





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h2. User Guide:





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bq. see [[Appion User Guide|Appion User Guide]]





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h2. Publications:





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h3. Primary Publication to Cite:





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* Lander, G.C.; Stagg, S.M., Voss, N.R., Cheng, A., Fellmann, D., Pulokas, J., Yoshioka, C., Irving, C., Mulder, A., Lau, P.W., _et al._ (2009). "Appion: an integrated, database-driven pipeline to facilitate EM image processing.". Journal of Structural Biology 166: 95-102. "PMID 19263523":http://www.ncbi.nlm.nih.gov/pubmed/19263523. 





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h3. Additional References:





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* Voss, N.R.; Lyumkis D, Cheng A, Lau PW, Mulder A, Lander GC, _et al._ (2010). "A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.". Journal of Structural Biology 169 (3): 389-98. "PMID 20018246":http://www.ncbi.nlm.nih.gov/pubmed/20018246.





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* Stagg, S.M.; Lander GC, Quispe J, Voss NR, Cheng A, Bradlow H, Bradlow S, Carragher B, Potter CS (2008). "A test-bed for optimizing high-resolution single particle reconstructions". Journal of Structural Biology 163 (1): 29-39. "PMID 18534866":http://www.ncbi.nlm.nih.gov/pubmed/18534866.





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h2. Software Availability and Licensing Information





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Appion is released under the "Apache License, Version 2.0":http://www.apache.org/licenses/LICENSE-2.0





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View an [[myami code diagram|overview of the Appion code]] base found in the "myami" repository.





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h2. Youtube videos:





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* "An Introduction to Appion":http://www.youtube.com/watch?v=Wlxt_4yJKgA





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* "TiltPicker Demonstration":http://www.youtube.com/watch?v=z7BqGJczmjU