Leginon

h1. New User Features 3.2

h2. JEOL JEM 1400 and above control (using JEOL TEMCOM)

See [[ [[JEOL_installation_specifics]] and [[Leginon_Operation_for_JEM_scopes|Operation Notes]]

h3. What does not work

* Usage of Piezo Stage for fine stage movement does not work.

* Omega filter alignment does not work.  We can only insert/retract the slit for now.

* Moterized aperture control alignment is not implemented.

h3. User Features specific to JEOL TEMCOM scopes

# MSI-T Application designed for JEOL socpes with large LOW MAG hysteresis #3669.

# Automatically open column valve before taking an image #3267

h2. General

1. Automatically lift screens before an image is taken #3002.

2. Enhanced TargetPanel.py to read specific frame of an image stack #3561

3. Allow users to specify preset name during image upload #3382

4. RCT feature matching with opencv #3020 (Contributed by Peter Kraft)

5. Option to pause longer on the first target imaged from a list #2959

h1. Calibration Tools

1. Manual image beam shift compensation calibrator for JEOL scopes #3291

2. Script for copying K2 counting mode calibration to super-resolution mode #3247

h1. Administrator Tools

1. Restrict projects seen by the users during Leginon Setup #3184

2. Handling of MRC frame interception of Falcon II movies #3238

3. Allow mysql port to be specified in sinedon.cfg #3028

4. Allow sinedon.cfg, leginon.cfg and redux.cfg locations specified with environment variable #18698

5. Tools for archiving Leginon project data #2915

h1. Developer Features 3.2

1. Camera Simulator subclass that mimics K2 camera counting and super-resolution mode #3359

2. Append and write labels to mrc files #2983