FindEM¶

Description: fast local correlation function particle picker

Version: 2.0

Release Date: 28-Jan-2009

Downloads: findem-2.0.tgz

Contact: For more information contact us at amisoftware@scripps.edu.

Supported OS: Linux/x86    IRIX    Windows    MacOS X

Documentation: "FindEM--a fast, efficient program for automatic selection of particles from electron micrographs." (2004) Roseman AM. J Struct Biol. v145(1-2). PMID: 15065677

We don't use FindEM directly in the AMI lab. It is wrapped up in our Appion software which provides a user interface.
Using FindEM directly is difficult, requiring you to write separate scripts for each processing thread used for each template. Results then need to be played with quite a bit to understand/visualize. AMI has no documentation related to using FindEM outside of Appion. You can view the Appion wrapped FindEM Help page for using FindEM within Appion.