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TiltPicker Installation » History » Version 2

Amber Herold, 02/01/2011 03:59 PM

1 1 Amber Herold 
h1. TiltPicker Installation
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Installation steps:





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 * Install python packages





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 * Compile python modules





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 * Run it





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h2. Install required python packages





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h2. The following python pacakges must be installed and working 





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 * numpy, http://numpy.scipy.org





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 * scipy, http://scipy.org





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 * wxPython, http://www.wxpython.org





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 * python imaging library (PIL), http://www.pythonware.com/products/pil





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h2. Installing on popular distros 





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h3. Fedora





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all 4 modules are available through yum





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Optional: you will also need to install 'python-setuptools-devel' to compile the radermacher and numextension modules (detailed below)





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h3. Ubuntu 





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all 4 modules are available through apt-get or synaptic





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h3. SUSE 





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modules can be downloaded from, http://download.opensuse.org/repositories/science





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h3. MacOS X 10.4 (Tiger) 





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For a full unix experience, install either fink (http://fink.sf.net) or macports (http://www.macports.org). 





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Alternatively, you could install MacPython.





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h3. MacOS X 10.5 (Leopard) 





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wxPython and numpy are installed by default you just need to install PIL and scipy, see PIL & scipy websites (above) or fink/macports (above)





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h3. RHEL5 / CentOS 5





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Compatible packages are available in Extra Packages for Enterprise Linux (EPEL)





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* http://fedoraproject.org/wiki/EPEL





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* contains a wealth of packages required for appion





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Download repository rpm and install





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<pre>





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$ sudo rpm -Uvh http://download.fedora.redhat.com/pub/epel/5/`uname -i`/epel-release-5-3.noarch.rpm





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$ sudo yum install -y wxPython numpy scipy python-imaging python-tools python-devel





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</pre>





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h3. Microsoft Windows 





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# Install the FULL edition of python(x,y): http://www.pythonxy.com/download.php





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# Expand tiltpicker.tgz (e.g. with 7zip) http://www.7-zip.org/download.html





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# Start "IPython(wxPython)" interactive console by clicking on the GREEN "C:>" icon





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# Change directory to the tiltpicker source





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# <pre> cd modules\radermacher </pre>





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# <pre> python setup.py build -c mingw32 </pre>





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# <pre> copy build\lib.win32-2.5 ..\.. </pre>





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# <pre> cd ..\.. </pre>





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# <pre> ApTiltPicker.py -l rawu049b.jpg -r rawu048b.jpg -t 50.0 </pre>





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Thanks to Matthias Wolf for this.





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h2. Test to see if these modules work open a python shell 





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<pre>





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# python





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</pre>





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and import the modules:





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<pre>





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>>> import wx     #wxPython





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>>> import Image  #python imaging





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>>> import scipy





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>>> import numpy





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</pre>





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h2. Compile or copy python module 





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A custom modules is optional for using tiltpicker and there are two ways you can use them 





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depending on whether or not you have root access. A slower python implementation of the algorithm 





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is provided for those who cannot get past this step





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h3. Compile and install globally with root access 





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<pre>





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cd tiltpicker/modules/radermacher





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python setup.py build





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sudo python setup.py install





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</pre>





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h3. Compile and install locally without root access 





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<pre>





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cd tiltpicker/modules/radermacher





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python setup.py build





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cp build/*/radermacher.so ../..





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</pre>





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after all is done, go to the tiltpicker directory and type:





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<pre>





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# python





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>>> import radermacher





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</pre>





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and if nothing happens, it works





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h2.  Run it 





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To get the help message for the function run:





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<pre>





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./ApTiltPicker.py --help





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</pre>





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An example session it setup in the following shell files:





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<pre>





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./runPicker.sh





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./runPicked.sh





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</pre>





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Still having problems or just want to chat, email me at: vossman77 (at) yahoo.com





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neil