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Task #1033

closed

Install protomo2 on amiboxes

Added by Amber Herold about 14 years ago. Updated about 14 years ago.

Status:
Closed
Priority:
Immediate
Assignee:
Christopher Irving
Category:
-
Target version:
-
Start date:
11/11/2010
Due date:
% Done:

0%

Estimated time:

Description

Christopher,
Could you please install the protomo package on the amiboxes as well. It will make for easier development. There are also 3rd party packages that need to be installed on amiboxes and Guppy for it to work. if you try to import protomo in python, there are errors right now, Hanspeter should be able to help determine what packages are still needed.

It would be nice to have this done in the AM so it will be ready to go when I get in at lunchtime.


Related issues 1 (0 open1 closed)

Related to Appion - Feature #1026: Add Protomo 2 in to our processing pipelineClosed11/11/2010

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Actions #1

Updated by Christopher Irving about 14 years ago

  • Status changed from Assigned to Closed

Protomo is installed in the ami shared software directory which is accessible on the amiboxes as /ami/sw. To use it you will need to make sure your environment is setup correctly. This can be done in two ways. Source the appropriate ami shell rc file (either /ami/sw/ami.csh or /ami/sw/ami.sh) or add the following lines to your own .cshrc or .profile
.cshrc
setenv I3ROOT /ami/sw/packages/PROTOMO
setenv PATH ${I3ROOT}/bin:${I3ROOT}/bin/linux/x86-64:${PATH}
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${I3ROOT}/lib/linux/x86-64
setenv PYTHONPATH ${I3ROOT}/lib/linux/x86-64:${PYTHONPATH}

.profile
export I3ROOT=/ami/sw/packages/PROTOMO
export PATH=${I3ROOT}/bin:${I3ROOT}/bin/linux/x86-64:${PATH}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${I3ROOT}/lib/linux/x86-64
export PYTHONPATH=${I3ROOT}/lib/linux/x86-64:${PYTHONPATH}

Note: I changed the occurrences of PROTOMO to I3ROOT. AMS

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