Bug #1051
closedError when trying to do Helical Insert in Manual Picker
0%
Description
Manual picker is not working for picking filaments. See the error message below. Also, my images were uploaded (not collected on leginon) and are rectangles (13176x8964). They get rescaled in manual picker (to 13176x8960), and the whole micrograph shows up for particle picking, but it is preventing me from selecting particles outside of an imaginary 8960x8960 box. This severely limits my data selection and is a big problem for people with rectangular images.
COMMAND:
/ami/sw/bin/appion manualpicker.py --projectid=277 --preset=upload --session=10nov19z --runname=manrun1 --rundir=/ami/data00/appion/10nov19z/extract/manrun1 --no-rejects --no-wait --commit --limit=2 --continue --median=2 --lowpass=15 --highpass=0 --planereg --bin=8 --diam=330 --pixlimit=4.0 --shape=plus --shapesize=16
OUTPUT/ERROR MESSAGE:
Beginning Main Loop
Starting image 1 ( skip:0, remain:1 ) id:1388369, file: 10nov19z_a4397
... Pixel size: 1.8
... reading filtered image from mrc file
Traceback (most recent call last):
File "/ami/sw/packages/myami-2.1/appion/bin/manualpicker.py", line 290, in onHelicalInsert
targets = self.panel.getTargets('Select Particles')
File "/ami/sw/packages/myami-2.1/leginon/gui/wx/TargetPanel.py", line 81, in getTargets
return self._getSelectionTool().getTargets(name)
File "/ami/sw/packages/myami-2.1/leginon/gui/wx/SelectionTool.py", line 177, in getTargets
return self._getTypeTool(name).targettype.getTargets()
File "/ami/sw/packages/myami-2.1/leginon/gui/wx/SelectionTool.py", line 101, in _getTypeTool
raise ValueError('No type \'%s\' added' % name)
ValueError: No type 'Select Particles' added