Bug #1074
closeddefault appion outdir becomes appiontest/appiondata if the image path for leginon is leginontest/leginondata
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Description
This does not happen at NRAMM but at UCLA and possibly other outside sites. Ideally it should use some kind of config file to determine where the sister paths should be between leginon and appion but the config file solution would not work if the data is moved from one disk to another.
At UCLA, [Images] module in their leginon.cfg is assigned to /data/leginon/leginon. While it is odd from our point of view. it is a natural decision on their site because it works better for their file mounting system
to create a mount point at /data/leginon that allows write access to their general users.
To fix this bug, many php scripts in myamiweb/processing need to be changed to substitute only the last "leginon" string found, not all as ereg_replace would do in php. Also, the python script appionloop need to be changed together.