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Bug #1111

open

rescale model error

Added by Anchi Cheng almost 14 years ago. Updated over 13 years ago.

Status:
In Test
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
-
Start date:
12/23/2010
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

Happened when I run this, but can happen any time model need to be rescaled. xmippRefine.py is still under development so other bugs may show up even if it passes this one

xmippRefine.py \
--projectid=234 --stackid=4 --modelid=3 --rundir=. --pixelSize=1.63 \
--boxSize=168 --NumberOfIterations=10 --MaskRadius=82 --Mask= \
--InnerRadius=4 --OuterRadius=82 --AngularSteps=1x10 --MaxAngularChange=1x1000 \
--MaxChangeOffset=1000 --Search5DShift=0 --Search5DStep=2 --SymmetryGroup=d7 \
--DiscardPercentage=10 --ReconstructionMethod=fourier --ARTLambda=0.15 \
--FourierMaxFrequencyOfInterest=0.25 --DoComputeResolution \
--DoLowPassFilter --DontUseFscForFilter --ConstantToAddToFiltration=0.1 \
--NumberOfMPIProcesses=2 --NumberOfThreads=8

Traceback (most recent call last):
File "/opt/appion/bin/xmippRefine.py", line 351, in ?
refine3d.start()
File "/opt/appion/bin/xmippRefine.py", line 167, in start
apModel.rescaleModel(self.params['modelid'], fnRef, self.params['boxSize'], self.p
arams['pixelSize'], spider=True)
File "/usr/lib64/python2.4/site-packages/appionlib/apModel.py", line 25, in rescaleM
odel
apVolume.rescaleVolume(modelfile, outfile, inapix, newapix, newbox, spider=False)
NameError: global name 'inapix' is not defined

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