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Bug #1161

open

Imagic mra crashes

Added by Arne Moeller over 13 years ago.

Status:
New
Priority:
Normal
Assignee:
Dmitry Lyumkis
Category:
-
Target version:
-
Start date:
01/26/2011
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

I used Imagic Mra brute force without centering and mirroring the images and it crashes with this error message:

EMAN: proc2d /ami/data08/appion/10jul20b/templatestacks/templatestack2/templatestack2.img
/ ... RefAlign11/references.img
IMAGIC: /ami/data08/appion/10jul20b/align/multiRefAlign11/prepareStack.batch

Traceback (most recent call last):
File "/opt/appion/bin/imagicMultiReferenceAlignment.py", line 633, in ?
imagicalignment.start()
File "/opt/appion/bin/imagicMultiReferenceAlignment.py", line 565, in start
logfile = open(os.path.join(self.params['rundir'], "prepareStack.log"))
IOError: [Errno 2] No such file or directory: '/ami/data08/appion/10jul20b/align/multiRefAlign11/prepareStack.log'

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