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Bug #12483
openDogPicker can not find any peaks.
Status:
Assigned
Priority:
High
Assignee:
Sargis Dallakyan
Category:
-
Target version:
Start date:
04/18/2022
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.6
Show in known bugs:
No
Workaround:
Description
broken by Issue #12257
apPeaks.py did not use keyword argument so that the input variables for pyami.imagefun.find_blobs do not match properly.
The new code also does not output moment which apPeaks expect to get.
roundness is a useful parameter to filter. Please fix the bug and add min roundness as an advanced parameter for users on myamiweb such as https://emgweb.nysbc.org/betamyamiweb/processing/runAppionLoop.php?expId=12578&form=DogPickerForm
good default would be a small number like 0.5. 1 is a round object
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