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Bug #1269

closed

Autoalign Tilt pairs not running

Added by Erica Jacovetty over 13 years ago. Updated almost 13 years ago.

Status:
Closed
Priority:
High
Assignee:
-
Category:
-
Target version:
-
Start date:
04/22/2011
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

Autoalign tilt pairs is not running for me. It does not fail. It just sits at the point of the first image, log file says:

Beginning Main Loop

Starting image 1 ( skip:37, remain:474 ) id:1501903, file: 11mar14c_029gr_01sq_02hl_04en
... Pixel size: 1.06024

It has been at this point for over an hour.

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 #1

Updated by Neil Voss over 13 years ago

It is notoriously difficult to use. I think the main problem you are having is the magnification is higher (80kX). I would try different values for the filtering, it seems to help. I am surprised that the defaults are hp = 0 and lp =15.

Experiment #1: hp = 500, lp = 50
Experiment #2: hp = 5000, lp = 100

Neil

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 #2

Updated by Neil Voss over 13 years ago

Oh, I've read your bug more closely, maybe try shuffle it could be that the first image pair is corrupt in some way.

Neil

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 #3

Updated by Amber Herold almost 13 years ago

  • Status changed from New to Closed

Closing - no longer relevant.

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