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Test Case #1662

open

Test Case #1591: Appion 2.2 Test Matrix

Run Multi-Model Refinement: XMIPP ML3D

Added by Amber Herold over 12 years ago. Updated over 12 years ago.

Status:
Fail
Priority:
High
Assignee:
Dmitry Lyumkis
Category:
-
Target version:
-
Start date:
03/15/2012
Due date:
% Done:

0%

Estimated time:

Description

Include tests for the Prep, Run and Upload steps.

Related issues 1 (0 open — 1 closed)

Related to Appion - Bug #1732: Add publication reference boxes to single and multi model refinement pagesClosedAmber Herold04/16/2012

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 #1

Updated by Arne Moeller over 12 years ago

  • Status changed from Untested to Fail

Several things:
1.There is no banner citing the respective publications
2.The prep step preps the data - however it does not show up as ready to run

maybe there is more - maybe not - I was not able to test it further

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 #2

Updated by Amber Herold over 12 years ago

  • Assignee set to Dmitry Lyumkis

Funny, looks like Arne already ran it.

Dmitry, could you take a closer look into this. I ran and uploaded successfully using a single initial model, but not with 2 initial models.

Thanks!

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 #3

Updated by Amber Herold over 12 years ago

Also Dmitry, I have a change in my workspace that I'm not sure why I made now...I changed line 158 of uploadXmippML3DRefine.py to be 

docfile = "ml3d_it%.6d_vol%.6d.sel" % (iteration, reference_number)

Thats .sel instead of .doc. Can you tell me if that change is needed?

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 #4

Updated by Dmitry Lyumkis over 12 years ago

as the code is written, it looks like it should be .doc, not .sel (docfiles have the image number every other line, which is what it wants).

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