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Bug #1701

closed

maxlikeAlignment.py has some hard-coded directory and host specification

Added by Anchi Cheng over 12 years ago. Updated over 12 years ago.

Status:
Won't Fix or Won't Do
Priority:
High
Assignee:
Amber Herold
Category:
-
Target version:
Appion/Leginon Future Version
Start date:
04/09/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0 (trunk)
Show in known bugs:
No
Workaround:

Description

Found

rundir = os.path.join("/lustre/people/vossman/xmippdata", self.params['runname'])
f.write("setenv XMIPP_HOME /lustre/people/vossman/Xmipp-2.3-src/\n")

Both in the function writeClusterJobFile. Does this work for us because this function is never used now a day since --cluster is never on?

Related issues 1 (1 open — 0 closed)

Related to Appion - Feature #1748: Allow maxlikealign jobs to run on remote clustersNewSargis Dallakyan04/20/2012

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 #1

Updated by Neil Voss over 12 years ago

This is old code from the debugging stage of the program, I did not want to delete just in case I needed it again, but I think it can be deleted now. Sorry.

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 #2

Updated by Amber Herold over 12 years ago

  • Assignee changed from Neil Voss to Amber Herold

I'll remove it. thanks neil

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 #3

Updated by Amber Herold over 12 years ago

  • Target version changed from Appion/Leginon 2.2.0 to Appion/Leginon Future Version

Yeah, this function is never used since we don't ever write the cluster job file. When we do port maxLikeAlign to be cluster ready, we will use the refinement model of creating job files. I'm going to leave this code in for now, so we have it for reference for future refactoring.

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 #4

Updated by Amber Herold over 12 years ago

  • Status changed from Assigned to Won't Fix or Won't Do

Closing this out, added #1748 which will make use of the code related to this issue that is currently unused.

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