Bug #1831
closed--ctftilt= always show up in prepRefineForm.php for Frealign
0%
Description
--ctftilt is a flag in the appion script. It does not have a value assignment and should not appear in the resulting command if "Allow Frealign to determine ctf estimation" is selected.
"Allow Frealign to determine ctf estimation" is selected : --noctf
"Allow Frealign to determine ctf estimation" is Not selected and the user want to use only ctftilt result (no gui): --ctftilt
"Allow Frealign to determine ctf estimation" is Not selected and the user want to use any ctf estimation (no gui) (default): (no flag set)
Should decide whether to add to 2.2 or not immediately
Updated by Amber Herold over 12 years ago
- Priority changed from Urgent to High
- Target version changed from Appion/Leginon 2.2.0 to Appion/Leginon 2.2.1
- Show in known bugs changed from No to Yes
I took a look at the code, and it is not clear to me why --ctftilt= is being added to the command. Parhaps a bug. I'll have to take a closer look after release.
Updated by Amber Herold over 12 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Amber Herold to Anchi Cheng
Merged to 2.2 already
Updated by Anchi Cheng about 12 years ago
- Assignee changed from Anchi Cheng to Amber Herold
- Affected Version changed from Appion/Leginon 2.2.0 (trunk) to Appion/Leginon 2.2.0
Could not find the gui option "Allow Frealign to determine ctf estimation" any more. Was it removed?
Updated by Amber Herold about 12 years ago
Yes, #1842 removes the ctf estimation option.
Updated by Anchi Cheng about 12 years ago
- Status changed from In Code Review to Closed
code reviewed and tested in case of ctftilt is used and not. Both outpot o.k.