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Bug #1906

closed

imagic_to_mrc function in pyami.imagic2mrc.py need a flip in y axis

Added by Anchi Cheng over 12 years ago. Updated over 12 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
Category:
-
Target version:
Start date:
07/12/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0 (trunk)
Show in known bugs:
No
Workaround:

Description

It appears that when Imagic file is created by EMAN from mrc images, there is a horizontal flip. To keep the converted mrc file in the same orientation as the image generated not from this prior conversion, we will need to do a flip to reverse this effect.


Related issues 1 (1 open0 closed)

Related to Appion - Bug #4382: Image flipping for IMAGIC format in apImagicFile.pyAssignedAnchi Cheng08/14/2016

Actions
Actions #1

Updated by Jim Pulokas over 12 years ago

  • Status changed from Assigned to In Test
  • Assignee changed from Jim Pulokas to Anchi Cheng

added option to flip in r16960
for example:

./imagic2mrc.py ~/nis/eman/test/start test.mrc yflip

(either put "yflip" as last arg, or don't put it for the original behavior)
I have not confirmed that it actually works. Also probably not very efficient and maybe should go into some compiled module if a speed improvement is needed.

Actions #2

Updated by Anchi Cheng over 12 years ago

  • Status changed from In Test to Closed

r16984 uses the new feature. Test is godd.

Actions #3

Updated by Neil Voss about 8 years ago

  • Related to Bug #4382: Image flipping for IMAGIC format in apImagicFile.py added
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