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Bug #1906
closedimagic_to_mrc function in pyami.imagic2mrc.py need a flip in y axis
Start date:
07/12/2012
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 2.2.0 (trunk)
Show in known bugs:
No
Workaround:
Description
It appears that when Imagic file is created by EMAN from mrc images, there is a horizontal flip. To keep the converted mrc file in the same orientation as the image generated not from this prior conversion, we will need to do a flip to reverse this effect.
Updated by Jim Pulokas over 12 years ago
- Status changed from Assigned to In Test
- Assignee changed from Jim Pulokas to Anchi Cheng
added option to flip in r16960
for example:
./imagic2mrc.py ~/nis/eman/test/start test.mrc yflip
(either put "yflip" as last arg, or don't put it for the original behavior)
I have not confirmed that it actually works. Also probably not very efficient and maybe should go into some compiled module if a speed improvement is needed.
Updated by Anchi Cheng over 12 years ago
- Status changed from In Test to Closed
r16984 uses the new feature. Test is godd.
Updated by Neil Voss over 8 years ago
- Related to Bug #4382: Image flipping for IMAGIC format in apImagicFile.py added
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