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Bug #1963

closed

floating point exception in Redux when viewing stack

Added by Amber Herold over 12 years ago. Updated almost 12 years ago.

Status:
Closed
Priority:
Immediate
Assignee:
Amber Herold
Category:
Web interface
Target version:
Start date:
08/03/2012
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.0.0
Show in known bugs:
No
Workaround:

Description

When trying to view a stack, there is a floating point exception in Redux which results in a core dump. Redux server must then be restarted.
This is a URL to recreate the error:
http://cronus3.scripps.edu/betamyamiweb/processing/viewstack.php?file=/ami/data00/appion/zz07jul25b/stacks/stack86/start.hed&expId=8556&stackId=87&ps=1.63e-10

This is there error on the web page:

Warning: socket_connect(): unable to connect [111]: Connection refused in /srv/www/httpd/betamyamiweb/inc/redux.inc on line 338 Warning: socket_write(): unable to write to socket [32]: Broken pipe in /srv/www/httpd/betamyamiweb/inc/redux.inc on line 339 Warning: socket_read(): unable to read from socket [107]: Transport endpoint is not connected in /srv/www/httpd/betamyamiweb/inc/redux.inc on line 344 stack: /ami/data00/appion/zz07jul25b/stacks/stack86/start.hed

This is what is in the Redux log file:

REQUEST: pipeline=standard&filename=/ami/data00/appion/zz07jul25b/stacks/stack84/average.mrc&rgb=1&shape=150x150
&scaletype=minmax&scalemin=-3.5601949691772&scalemax=3.9171116352081&oformat=PNG
NOT IN MEMORY: Format(23506896,oformat=PNG,rgb=True)NOT IN MEMORY: Scale(23504144,scalemax=2.23885393143,scalemi
n=-1.98805940151,scaletype=minmax)

NOT IN MEMORY: Scale(23505936,scalemax=3.91711163521,scalemin=-3.56019496918,scaletype=minmax)NOT IN MEMORY: Sha
pe(23503632,shape=(150, 150))

NOT IN MEMORY: Read(23505872,filename=/ami/data00/appion/zz07jul25b/stacks/stack86/average.mrc,info=False)NOT IN
 MEMORY: Shape(23503760,shape=(150, 150))

NOT IN MEMORY: Read(23505808,filename=/ami/data00/appion/zz07jul25b/stacks/stack84/average.mrc,info=False)Runnin
g Read(23505872,filename=/ami/data00/appion/zz07jul25b/stacks/stack86/average.mrc,info=False)

Running Read(23505808,filename=/ami/data00/appion/zz07jul25b/stacks/stack84/average.mrc,info=False)
Running Shape(23503632,shape=(150, 150))Running Shape(23503760,shape=(150, 150))

[1]+  Floating point exception(core dumped) nohup reduxd > /root/redux.log

Actions #1

Updated by Jim Pulokas over 12 years ago

  • Status changed from Assigned to In Test
  • Assignee changed from Jim Pulokas to Amber Herold

r17003 fixes this by properly handling the case of scaling image to larger size. This was commited to trunk, so anything using redux branch should be replace with trunk. Following update, reduxd should be restarted.

Actions #2

Updated by Anchi Cheng over 12 years ago

switch to trunk and updated on cronus3.

Actions #3

Updated by Amber Herold almost 12 years ago

  • Status changed from In Test to Closed
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